FN3869-S Chr3 27625501 27625502 0 0 Deletion 1 INTERGENIC Hetero FN3869-S Chr4 3351474 3351483 0 0 Deletion 9 INTRON Hetero FN3869-S Chr4 20651275 20651277 0 0 Deletion 2 INTERGENIC Hetero FN3869-S Chr5 6804368 6804369 0 0 Deletion 1 INTRON Homo FN3869-S Chr5 11213130 11213132 0 0 Deletion 2 INTERGENIC Hetero FN3869-S Chr7 12673939 12673943 0 0 Deletion 4 INTERGENIC Homo FN3869-S Chr7 19367096 19367097 0 0 Deletion 1 INTERGENIC Homo FN3869-S Chr7 19801449 19801450 0 0 Deletion 1 INTERGENIC Hetero FN3869-S Chr7 21376827 21376828 0 0 Deletion 1 FRAME_SHIFT Homo OsKitaake07g177600 AMYB_MEDSA Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=Length=49 FN3869-S Chr7 21534983 21534985 0 0 Deletion 2 INTRON Homo FN3869-S Chr9 12180347 12180352 0 0 Deletion 5 INTERGENIC Homo FN3869-S Chr10 6179143 6179144 0 0 Deletion 1 INTERGENIC Homo FN3869-S Chr10 23581731 23581734 0 0 Deletion 3 INTERGENIC Hetero FN3869-S Chr12 20699015 20699021 0 0 Deletion 6 FRAME_SHIFT Homo OsKitaake12g161300 VIL1_ARATH VIN3-like protein 1 OS=Arabidopsis thaliana GN=VIL1 PE=1 SV=Length=60 FN3869-S Chr2 3769690 3769690 0 0 Insertion 2 INTRON Hetero FN3869-S Chr3 6726470 6726470 0 0 Insertion 2 INTERGENIC Hetero FN3869-S Chr12 26723647 26723648 0 0 Deletion 1 Hetero 0 FN3869-S Chr8 21573871 Chr1 44258297 0 Translocation 0 Hetero OsKitaake01g494600 CYSKP_SOLTU Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=Length=38 FN3869-S Chr6 30916233 Chr3 37589773 0 Translocation 0 Hetero FN3869-S Chr8 22127025 Chr1 44102044 0 Translocation 0 Hetero FN3869-S Chr8 21574554 22127048 0 0 Inversion 0 Hetero FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g492100 IPYR4_ARATH Soluble inorganic pyrophosphatase 4 OS=Arabidopsis thaliana GN=PPA4 PE=1 SV=Length=21 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g492200 A0A0E0N897_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=11 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g492300 UFC_ARATH Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=Length=41 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g492500 MYBA2_ORYSJ Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=Length=24 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g492600 B9G6I4_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_32080 PE=4 SV=Length=99 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g492700 AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=Length=29 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g492800 TIP12_ORYSJ Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=Length=25 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g492900 MON1_ORYSJ Vacuolar fusion protein MON1 homolog OS=Oryza sativa subsp. japonica GN=MON1 PE=3 SV=Leng FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493000 AB20B_ARATH ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=1 SV=Length=140 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493050 Hypothetical protein FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493100 11S2_SESIN 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=Length=45 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493200 NAKR1_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis thaliana GN=NAKR1 PE=1 SV=Lengt FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493300 RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsi FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493400 NET2D_ARATH Protein NETWORKED 2D OS=Arabidopsis thaliana GN=NET2D PE=3 SV=Length=94 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493500 COQ5_ORYSJ 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Oryza sativa subsp. ja FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493600 P2C38_ARATH Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=PP2C38 PE=1 SV=Length=38 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493700 GAT16_ARATH GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=Length=13 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493800 Y1677_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thal FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g493900 TET5_ARATH Tetraspanin-5 OS=Arabidopsis thaliana GN=TET5 PE=2 SV=Length=28 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g494000 DJC15_ORYSJ DnaJ protein P58IPK homolog B OS=Oryza sativa subsp. japonica GN=P58B PE=1 SV=Length=47 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g494100 MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=Length=30 FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g494200 PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thal FN3869-S Chr1 44099001 44235000 0 0 Deletion 135999 OsKitaake01g494300 LTN1_ARATH E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana GN=At5g58410 PE=3 SV=Length= FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055200 AGO17_ORYSJ Protein argonaute 17 OS=Oryza sativa subsp. japonica GN=AGO17 PE=2 SV=Length=87 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055300 A0A0E0QGT3_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=8 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055400 GCSH2_ARATH Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=GDH2 PE=2 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055500 A0A0E0NAF9_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=86 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055550 CAND1_ARATH Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1 PE=1 SV=L FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055600 A0A0E0G1Z8_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=78 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055700 IMPL1_ARATH Phosphatase IMPL1, chloroplastic OS=Arabidopsis thaliana GN=IMPL1 PE=1 SV=Length=37 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055800 PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g351 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g055900 GCSH2_ARATH Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=GDH2 PE=2 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056000 Q6H712_ORYSJ Os02g0170200 protein OS=Oryza sativa subsp. japonica GN=Os02g0170200 PE=2 SV=Length=16 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056100 MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=Lengt FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056200 A0A0D3F1A6_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=8 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056300 NFYC4_ORYSJ Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica GN=NFYC4 PE=1 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056400 Hypothetical protein FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056300 NFYC4_ORYSJ Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica GN=NFYC4 PE=1 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056450 A0A0P0VFD4_ORYSJ Os02g0170701 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0170701 PE= FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056500 Q6H704_ORYSJ Os02g0170900 protein OS=Oryza sativa subsp. japonica GN=P0030G02.24-1 PE=2 SV=Length=41 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056600 G3PP2_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic OS=Arabidopsis thaliana G FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056700 A0A0E0NAI0_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=9 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056720 A0A0D9YMY8_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=9 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056740 Q6H6Z6_ORYSJ Putative uncharacterized protein P0030G02.43 OS=Oryza sativa subsp. japonica GN=P0030G0 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056760 DEF2_CAPAN Defensin J1-2 OS=Capsicum annuum PE=1 SV=1Length=7 FN3869-S Chr2 3826001 4010000 0 0 Deletion 183999 OsKitaake02g056780 DEF2_CAPAN Defensin J1-2 OS=Capsicum annuum PE=1 SV=1Length=7 FN3869-S Chr4 19433001 19450000 0 0 Deletion 16999 OsKitaake04g099601 FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=Length=85 FN3869-S Chr4 22354001 22363000 0 0 Deletion 8999 OsKitaake04g130700 ASHH1_ARATH Histone-lysine N-methyltransferase ASHH1 OS=Arabidopsis thaliana GN=ASHH1 PE=1 SV=Length FN3869-S Chr6 2189001 2220000 0 0 Deletion 30999 OsKitaake06g028100 HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=Length=51 FN3869-S Chr6 2189001 2220000 0 0 Deletion 30999 OsKitaake06g028200 NUD19_ARATH Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=Length=43 FN3869-S Chr6 2189001 2220000 0 0 Deletion 30999 OsKitaake06g028300 YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / FN3869-S Chr6 2189001 2220000 0 0 Deletion 30999 OsKitaake06g028400 NO93_SOYBN Early nodulin-93 OS=Glycine max PE=2 SV=1Length=10 FN3869-S Chr6 2189001 2220000 0 0 Deletion 30999 OsKitaake06g028500 NO93_SOYBN Early nodulin-93 OS=Glycine max PE=2 SV=1Length=10 FN3869-S Chr6 2189001 2220000 0 0 Deletion 30999 OsKitaake06g028600 NO93_SOYBN Early nodulin-93 OS=Glycine max PE=2 SV=1Length=10 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g292900 TMM53_BOVIN Transmembrane protein 53 OS=Bos taurus GN=TMEM53 PE=2 SV=Length=29 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293000 A0A0D3GL50_9ORYZ Gamma-tubulin complex component OS=Oryza barthii PE=3 SV=Length=17 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293100 DAPB1_PSEMX Dipeptidyl aminopeptidase BI OS=Pseudoxanthomonas mexicana GN=dapb1 PE=1 SV=Length=72 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293200 CCD12_MOUSE Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=Length=16 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293300 SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=Length= FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293400 Q5Z412_ORYSJ Putative glycine-rich protein 1 OS=Oryza sativa subsp. japonica GN=B1206D04.14 PE=4 SV= FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293500 IDM1_ARATH Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=Length=118 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293600 WBC30_ARATH Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=1 SV FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293700 A0A0D3GL59_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=16 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293800 TET18_ARATH Tetraspanin-18 OS=Arabidopsis thaliana GN=TOM2AH2 PE=1 SV=Length=27 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g293900 KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=Length=183 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g294000 A0A0E0Q300_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=61 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g294100 CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica GN=Os06g0731800 PE=2 SV=Length=29 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g294200 A0A0E0HW00_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=36 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g294300 B9FR31_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_22756 PE=4 SV=Length=6 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g294500 Q5Z3Z9_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=B1206D04.28 PE=4 SV=Length=2 FN3869-S Chr6 30916001 31031000 0 0 Deletion 114999 OsKitaake06g294600 RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=Length=12 FN3869-S Chr7 9661001 9684000 0 0 Deletion 22999 OsKitaake07g096900 A0A0E0HZ24_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=78 FN3869-S Chr1 4293161 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr1 4293162 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr1 42902399 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3869-S Chr2 20211397 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3869-S Chr2 23892493 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3869-S Chr2 36146704 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake02g381700 ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=Length=23 FN3869-S Chr3 1545236 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr3 5887868 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr3 7158417 T-A 0 0 Single Base Substitution 0 STOP_GAINED Homo OsKitaake03g099700 BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=1 SV=Length=36 FN3869-S Chr3 10497903 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Homo FN3869-S Chr3 16998731 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr4 3194198 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr4 12820215 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr4 22367503 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3869-S Chr5 9241172 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3869-S Chr6 14937742 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr6 17600797 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3869-S Chr6 18803229 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Hetero FN3869-S Chr7 18867540 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3869-S Chr8 8964243 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr8 18328342 A-T 0 0 Single Base Substitution 0 INTRON Hetero FN3869-S Chr8 21378203 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr9 6330855 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN3869-S Chr9 7063526 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr9 8014497 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3869-S Chr9 20231570 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr10 1893541 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr10 13785411 A-G 0 0 Single Base Substitution 0 INTRON Homo FN3869-S Chr10 22969039 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr11 5930359 C-T 0 0 Single Base Substitution 0 INTRON Homo FN3869-S Chr11 29461317 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3869-S Chr12 8822817 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3869-S Chr12 13114733 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake12g109400 CDKF2_ORYSJ Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica GN=CDKF-2 PE=3 SV=L FN3869-S Chr12 14383022 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero