FN4040-S Chr1 18340517 18340536 0 0 Deletion 19 UTR_3_PRIME Homo FN4040-S Chr2 14645289 14645290 0 0 Deletion 1 INTERGENIC Homo FN4040-S Chr5 3761732 3761738 0 0 Deletion 6 UTR_3_PRIME Homo FN4040-S Chr7 186531 186539 0 0 Deletion 8 UTR_5_PRIME Hetero FN4040-S Chr7 28733168 28733170 0 0 Deletion 2 INTERGENIC Hetero FN4040-S Chr9 15900200 15900217 0 0 Deletion 17 INTERGENIC Homo FN4040-S Chr9 20366238 20366244 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION Homo OsKitaake09g171300 ROC6_ORYSJ Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=Leng FN4040-S Chr10 10289566 10289571 0 0 Deletion 5 INTERGENIC Homo FN4040-S Chr9 15121259 15121259 0 0 Insertion 3 INTERGENIC Hetero FN4040-S Chr11 3383179 3383179 0 0 Insertion 1 Hetero 0 FN4040-S Chr12 1277226 Chr5 24098810 0 Translocation 0 Hetero OsKitaake12g018600 BUBR1_ARATH Mitotic spindle checkpoint protein BUBR1 OS=Arabidopsis thaliana GN=BUBR1 PE=1 SV=Length FN4040-S Chr12 1277226 Chr5 24098810 0 Translocation 0 Hetero OsKitaake05g213200 A0A0E0PP78_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=10 FN4040-S Chr10 13260866 Chr4 9669275 0 Translocation 0 Hetero FN4040-S Chr11 21630099 21891102 0 0 Inversion 0 Hetero OsKitaake11g173100 RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=Length=37 FN4040-S Chr12 1150312 1605790 0 0 Inversion 0 Hetero OsKitaake12g024400 RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=Length=57 FN4040-S Chr12 1150321 1605823 0 0 Inversion 0 Hetero OsKitaake12g024400 RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=Length=57 FN4040-S Chr11 21630116 21903210 0 0 Inversion 0 Hetero FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g183700 BLH9_ARATH BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana GN=BLH9 PE=1 SV=Length=57 FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g183900 ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=Length=23 FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g184000 P5CS1_ORYSJ Delta-1-pyrroline-5-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=P5CS1 PE=2 FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g184100 PR1A3_ARATH PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=Length=20 FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g184200 UPP_TOBAC Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2 SV=Length=22 FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g184300 YIPF1_DICDI Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=Length=34 FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g184400 PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H6 FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g184600 YB95_ARATH Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE= FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g184700 I1PW97_ORYGL Uncharacterized protein OS=Oryza glaberrima PE=4 SV=Length=11 FN4040-S Chr5 22475001 22537000 0 0 Deletion 61999 OsKitaake05g184800 AKRCA_ARATH Aldo-keto reductase family 4 member C10 OS=Arabidopsis thaliana GN=AKR4C10 PE=1 SV=Lengt FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g184900 CSPLS_ORYSJ CASP-like protein 5B2 OS=Oryza sativa subsp. japonica GN=Os05g0456500 PE=2 SV=Length=15 FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g184950 Hypothetical protein FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g185000 Q60EL4_ORYSJ Os05g0456900 protein OS=Oryza sativa subsp. japonica GN=Os05g0456900 PE=4 SV=Length=9 FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g185100 UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=Length=44 FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g185200 A0A0D3G8J1_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=7 FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g185300 P2C49_ORYSJ Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=3 FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g185401 RL40B_ORYSJ Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-2 PE=3 FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g185500 Q65XG5_ORYSJ Os05g0457600 protein OS=Oryza sativa subsp. japonica GN=OJ1362_D02.2 PE=4 SV=Length=50 FN4040-S Chr5 22544001 22602000 0 0 Deletion 57999 OsKitaake05g185600 Q65XG4_ORYSJ Os05g0457700 protein OS=Oryza sativa subsp. japonica GN=Os05g0457700 PE=4 SV=Length=41 FN4040-S Chr11 21891001 21903000 0 0 Deletion 11999 OsKitaake11g173100 RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=Length=37 FN4040-S Chr11 21891001 21903000 0 0 Deletion 11999 OsKitaake11g173200 CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO PE=2 SV=Length=61 FN4040-S Chr11 21891001 21903000 0 0 Deletion 11999 OsKitaake11g173300 FB252_ARATH F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=Length=50 FN4040-S Chr1 22324776 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr2 16299839 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr3 13132595 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr3 18420512 G-A 0 0 Single Base Substitution 0 INTRON Homo FN4040-S Chr4 18034756 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr5 3649693 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4040-S Chr5 4146489 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN4040-S Chr5 21153891 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr5 23125544 G-T 0 0 Single Base Substitution 0 INTRON Hetero FN4040-S Chr5 23564654 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr5 26369725 C-T 0 0 Single Base Substitution 0 STOP_GAINED Homo OsKitaake05g233000 Y2921_ARATH Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thali FN4040-S Chr6 24071254 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr6 24071256 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr7 1216494 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr7 14426433 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr8 16854115 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr9 5399641 G-T 0 0 Single Base Substitution 0 INTRON Homo FN4040-S Chr9 20698467 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Hetero FN4040-S Chr10 4448032 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake10g033125 CHS3_BROFI Chalcone synthase 3 OS=Bromheadia finlaysoniana GN=CHS3 PE=2 SV=Length=39 FN4040-S Chr10 9256198 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr10 10088627 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4040-S Chr10 10088628 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4040-S Chr10 12970075 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr10 22566630 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN4040-S Chr11 5083029 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr11 11796137 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4040-S Chr11 24259183 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4040-S Chr11 24337151 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN4040-S Chr12 10208384 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4040-S Chr12 15640035 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo