FN4272-S Chr1 31104088 31104098 0 0 Deletion 10 INTERGENIC Hetero FN4272-S Chr1 35524071 35524075 0 0 Deletion 4 FRAME_SHIFT Hetero OsKitaake01g375800 CYSK4_ARATH Probable S-sulfocysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE FN4272-S Chr2 13290096 13290097 0 0 Deletion 1 INTERGENIC Hetero FN4272-S Chr2 21936518 21936520 0 0 Deletion 2 INTERGENIC Hetero FN4272-S Chr2 30470904 30470910 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION Hetero OsKitaake02g310700 CLU_ARATH Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=Length=140 FN4272-S Chr3 6959425 6959438 0 0 Deletion 13 INTRON Hetero FN4272-S Chr3 11840553 11840562 0 0 Deletion 9 CODON_DELETION Hetero OsKitaake03g161200 CHLH_ORYSJ Magnesium-chelatase subunit ChlH, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLH P FN4272-S Chr3 21201269 21201281 0 0 Deletion 12 INTERGENIC Homo FN4272-S Chr3 23990259 23990263 0 0 Deletion 4 INTERGENIC Homo FN4272-S Chr4 9994277 9994293 0 0 Deletion 16 INTERGENIC Hetero FN4272-S Chr4 19280740 19280741 0 0 Deletion 1 INTERGENIC Homo FN4272-S Chr5 9387420 9387425 0 0 Deletion 5 INTERGENIC Hetero FN4272-S Chr5 25714763 25714774 0 0 Deletion 11 INTERGENIC Hetero FN4272-S Chr5 29148122 29148124 0 0 Deletion 2 INTRON Hetero FN4272-S Chr6 28178269 28178273 0 0 Deletion 4 INTERGENIC Hetero FN4272-S Chr8 1663710 1663711 0 0 Deletion 1 INTERGENIC Homo FN4272-S Chr8 4969592 4969607 0 0 Deletion 15 INTERGENIC Hetero FN4272-S Chr8 4977754 4977759 0 0 Deletion 5 INTERGENIC Hetero FN4272-S Chr8 7772291 7772300 0 0 Deletion 9 CODON_CHANGE_PLUS_CODON_DELETION Hetero OsKitaake08g071200 RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=Length= FN4272-S Chr8 25146670 25146671 0 0 Deletion 1 UTR_5_PRIME Hetero FN4272-S Chr10 3790634 3790640 0 0 Deletion 6 INTERGENIC Hetero FN4272-S Chr12 1218212 1218219 0 0 Deletion 7 FRAME_SHIFT Hetero OsKitaake12g017500 ABA2_SOLLC Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=Length=66 FN4272-S Chr12 3844665 3844666 0 0 Deletion 1 INTERGENIC Hetero FN4272-S Chr12 8398182 8398183 0 0 Deletion 1 INTERGENIC Homo FN4272-S Chr12 10797128 10797129 0 0 Deletion 1 INTERGENIC Homo FN4272-S Chr12 23426788 23426797 0 0 Deletion 9 INTRON Hetero FN4272-S Chr12 25627649 25627654 0 0 Deletion 5 INTERGENIC Hetero FN4272-S Chr12 26201907 26201908 0 0 Deletion 1 INTERGENIC Hetero FN4272-S Chr1 23867723 23867723 0 0 Insertion 2 INTERGENIC Hetero FN4272-S Chr3 28053461 28053461 0 0 Insertion 2 INTERGENIC Hetero FN4272-S Chr3 31799345 31799345 0 0 Insertion 2 INTERGENIC Hetero FN4272-S Chr7 18988520 18988520 0 0 Insertion 3 INTERGENIC Hetero FN4272-S Chr12 26130634 26130634 0 0 Insertion 2 INTERGENIC Hetero FN4272-S Chr11 19899294 19899294 0 0 Insertion 2 Hetero 0 FN4272-S Chr9 22326836 Chr2 16682574 0 Translocation 0 Hetero OsKitaake09g202200 RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=Length=46 FN4272-S Chr9 22326839 Chr2 16681062 0 Translocation 0 Hetero OsKitaake09g202200 RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=Length=46 FN4272-S Chr10 4488463 Chr3 993043 0 Translocation 0 Hetero OsKitaake10g033300 U88F3_PYRCO UDP-glycosyltransferase 88F3 OS=Pyrus communis GN=UGT88F3 PE=2 SV=Length=48 FN4272-S Chr10 4488654 Chr3 993052 0 Translocation 0 Hetero OsKitaake10g033300 U88F3_PYRCO UDP-glycosyltransferase 88F3 OS=Pyrus communis GN=UGT88F3 PE=2 SV=Length=48 FN4272-S Chr9 22326839 Chr2 16681062 0 Translocation 0 Hetero OsKitaake02g170900 A0A0E0CKI9_9ORYZ Uncharacterized protein OS=Oryza meridionalis PE=4 SV=Length=14 FN4272-S Chr10 4488463 Chr3 993043 0 Translocation 0 Hetero OsKitaake03g015100 RIBD_MAIZE Riboflavin biosynthesis protein PYRD, chloroplastic OS=Zea mays GN=PYRD PE=2 SV=Length=39 FN4272-S Chr10 4488654 Chr3 993052 0 Translocation 0 Hetero OsKitaake03g015100 RIBD_MAIZE Riboflavin biosynthesis protein PYRD, chloroplastic OS=Zea mays GN=PYRD PE=2 SV=Length=39 FN4272-S Chr6 27262041 27300164 0 0 Inversion 0 Hetero FN4272-S Chr6 27262048 27300168 0 0 Inversion 0 Hetero FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049000 A0A0E0QEY1_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=10 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049100 A0A0P0XC71_ORYSJ Os08g0173000 protein OS=Oryza sativa subsp. japonica GN=Os08g0173000 PE=4 SV=Length FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049200 A0A0E0QEY3_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=13 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049300 A0A0E0QEY5_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=18 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049400 A0A0E0QEY6_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=17 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049500 A0A0E0QEY7_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=14 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049600 A0A0E0QEY8_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=11 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049700 ERF88_ARATH Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 S FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049800 A0A0E0I7Q7_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=17 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g049900 PMAT2_ARATH Phenolic glucoside malonyltransferase 2 OS=Arabidopsis thaliana GN=PMAT2 PE=1 SV=Length= FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g050000 ANTA_GENTR Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=Length=46 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g050100 HD5_ORYSJ Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica GN=HD5 PE=1 SV FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g050200 BAK1_ORYSJ LRR receptor kinase BAK1 OS=Oryza sativa subsp. japonica GN=BAK1 PE=1 SV=Length=62 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g050250 A0A0P0XCF6_ORYSJ Os08g0174750 protein OS=Oryza sativa subsp. japonica GN=Os08g0174750 PE=4 SV=Length FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g050300 RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=Length=92 FN4272-S Chr8 4346001 4436000 0 0 Deletion 89999 OsKitaake08g050400 CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 FN4272-S Chr1 3819267 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr1 4189029 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN4272-S Chr1 34969165 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4272-S Chr1 39199333 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN4272-S Chr2 5125617 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr2 9294810 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr2 12360118 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake02g139700 A0A0N7KF60_ORYSJ Os02g0310400 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0310400 PE= FN4272-S Chr2 24732806 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN4272-S Chr2 31046109 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr2 31093311 A-C 0 0 Single Base Substitution 0 INTRON Hetero FN4272-S Chr2 32270039 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN4272-S Chr2 33395629 A-G 0 0 Single Base Substitution 0 INTRON Hetero FN4272-S Chr3 3031235 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr3 4147766 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr3 4147770 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr3 10529190 C-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION Hetero FN4272-S Chr3 12595474 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr3 20786645 C-A 0 0 Single Base Substitution 0 INTRON Homo FN4272-S Chr3 20786646 T-C 0 0 Single Base Substitution 0 INTRON Homo FN4272-S Chr3 25153451 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4272-S Chr3 26409942 A-G 0 0 Single Base Substitution 0 INTRON Homo FN4272-S Chr3 27929992 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr4 200895 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr4 200898 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr4 8781551 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr4 16278667 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr4 16278669 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr6 869868 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr6 12247554 A-T 0 0 Single Base Substitution 0 INTRON Homo FN4272-S Chr6 27278643 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr7 12876448 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr7 13127541 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4272-S Chr7 19155447 T-C 0 0 Single Base Substitution 0 SPLICE_SITE_REGION Hetero FN4272-S Chr7 20185342 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN4272-S Chr8 3199216 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr8 6541835 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr8 11061252 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN4272-S Chr9 5112284 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr9 16629875 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr9 17007087 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr9 20450003 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr10 2485229 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr10 9112929 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr11 5335166 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr11 10277412 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr11 10277413 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr11 15685342 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr12 5778207 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN4272-S Chr12 8302091 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN4272-S Chr12 16168896 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN4272-S Chr12 24333161 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero