FN789-S Chr1 40614395 40614400 0 0 Deletion 5 INTERGENIC Hetero FN789-S Chr3 10696522 10696524 0 0 Deletion 2 INTERGENIC Hetero FN789-S Chr3 14250643 14250649 0 0 Deletion 6 INTERGENIC Hetero FN789-S Chr4 1694196 1694197 0 0 Deletion 1 INTERGENIC Hetero FN789-S Chr5 2524121 2524123 0 0 Deletion 2 INTERGENIC Hetero FN789-S Chr5 25900449 25900465 0 0 Deletion 16 INTERGENIC Hetero FN789-S Chr6 11635414 11635416 0 0 Deletion 2 INTERGENIC Hetero FN789-S Chr7 24916913 24916914 0 0 Deletion 1 INTERGENIC Homo FN789-S Chr9 18054810 18054818 0 0 Deletion 8 INTRON Homo FN789-S Chr9 19678957 19678977 0 0 Deletion 20 INTERGENIC Hetero FN789-S Chr10 4056965 4056970 0 0 Deletion 5 INTERGENIC Hetero FN789-S Chr11 23155137 23155138 0 0 Deletion 1 INTERGENIC Hetero FN789-S Chr11 25582049 25582050 0 0 Deletion 1 INTERGENIC Hetero FN789-S Chr11 27953368 27953377 0 0 Deletion 9 INTERGENIC Hetero FN789-S Chr12 8327979 8327981 0 0 Deletion 2 UTR_3_PRIME Hetero FN789-S Chr12 14077826 14077830 0 0 Deletion 4 INTERGENIC Hetero FN789-S Chr12 22048096 22048102 0 0 Deletion 6 INTERGENIC Homo FN789-S Chr12 23112100 23112101 0 0 Deletion 1 INTRON Homo FN789-S Chr3 12032838 12032838 0 0 Insertion 2 INTERGENIC Hetero FN789-S Chr6 20875897 20875897 0 0 Insertion 1 INTERGENIC Hetero FN789-S Chr1 17283622 17284286 0 0 Deletion 664 Hetero 0 FN789-S Chr3 16739732 16739904 0 0 Deletion 172 Hetero 0 FN789-S Chr7 20614241 Chr4 16058412 0 Translocation 0 Hetero FN789-S Chr7 20614244 Chr4 16057857 0 Translocation 0 Hetero FN789-S Chr8 7898829 Chr1 3942483 0 Translocation 0 Hetero FN789-S Chr1 3809340 3927825 0 0 Inversion 0 Homo OsKitaake01g051400 A0A0E0MS00_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=18 FN789-S Chr1 3927845 3942483 0 0 Inversion 0 Hetero OsKitaake01g052900 PID2_ORYSJ Protein kinase PINOID 2 OS=Oryza sativa subsp. japonica GN=PID2 PE=2 SV=Length=49 FN789-S Chr1 3809340 3927825 0 0 Inversion 0 Homo OsKitaake01g052900 PID2_ORYSJ Protein kinase PINOID 2 OS=Oryza sativa subsp. japonica GN=PID2 PE=2 SV=Length=49 FN789-S Chr10 1399573 1401076 0 0 Inversion 0 Homo FN789-S Chr10 1399577 1401081 0 0 Inversion 0 Homo FN789-S Chr1 11187001 11222000 0 0 Deletion 34999 OsKitaake01g137600 NOMO1_MOUSE Nodal modulator 1 OS=Mus musculus GN=Nomo1 PE=1 SV=Length=121 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306100 CRK10_ARATH Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=L FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306200 Hypothetical protein FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306300 UGPI7_ARATH Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306400 RECG_ARATH ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana GN=RECG PE FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306500 HSP7R_ARATH Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=Length=86 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306600 A0A0E0NJZ8_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=41 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306700 PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thal FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306800 Y1609_ARATH Uncharacterized protein At1g26090, chloroplastic OS=Arabidopsis thaliana GN=At1g26090 PE FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306700 PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thal FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306800 Y1609_ARATH Uncharacterized protein At1g26090, chloroplastic OS=Arabidopsis thaliana GN=At1g26090 PE FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g306900 HS178_ORYSJ 17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=Length=16 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g307000 A0A0D9YX99_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=13 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g307100 A0A0E0NK06_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=24 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g307200 DEGP7_ARATH Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=Length=109 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g307400 GALS1_ARATH Galactan beta-1,4-galactosyltransferase GALS1 OS=Arabidopsis thaliana GN=GALS1 PE=2 SV=L FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g307500 Hypothetical protein FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g307600 LRKS5_ARATH Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN= FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g307700 LRKS5_ARATH Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN= FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g307800 Q0DY64_ORYSJ Os02g0712800 protein OS=Oryza sativa subsp. japonica GN=Os02g0712800 PE=2 SV=Length=13 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308000 A0A0D3F9M4_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=15 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308100 NTRB_ORYSJ Thioredoxin reductase NTRB OS=Oryza sativa subsp. japonica GN=NTRB PE=2 SV=Length=33 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308200 FDL18_ARATH Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana GN=At3g49030 PE= FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308300 AHL29_ARATH AT-hook motif nuclear-localized protein 29 OS=Arabidopsis thaliana GN=AHL29 PE=1 SV=Leng FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308350 A0A0D9ZBR9_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=12 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308400 HMDH1_ORYSI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Oryza sativa subsp. indica GN=HMG1 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308500 ARP1_ARATH Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=Length=26 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308600 DAT2D_SOYBN Diacylglycerol O-acyltransferase 2D OS=Glycine max GN=DGAT2D PE=1 SV=Length=32 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308700 PFPA_RICCO Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communi FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308800 ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=1 SV FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g308900 TPC11_HUMAN Trafficking protein particle complex subunit 11 OS=Homo sapiens GN=TRAPPC11 PE=1 SV=Leng FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g309000 KPRS4_ORYSJ Ribose-phosphate pyrophosphokinase 4 OS=Oryza sativa subsp. japonica GN=Os02g0714600 PE= FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g309200 Q6ZFT3_ORYSJ Os02g0714700 protein OS=Oryza sativa subsp. japonica GN=Os02g0714700 PE=4 SV=Length=9 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g309300 HTR1A_DANRE Serine protease HTRA1A OS=Danio rerio GN=htra1a PE=2 SV=Length=47 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g309400 XCP1_ARATH Cysteine protease XCP1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=Length=35 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g309500 D42E1_DANRE Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 S FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g309600 Q6ZHP7_ORYSJ Os02g0715300 protein OS=Oryza sativa subsp. japonica GN=Os02g0715300 PE=2 SV=Length=18 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g309700 OEP7_ARATH Outer envelope membrane protein 7 OS=Arabidopsis thaliana GN=OEP7 PE=1 SV=Length=6 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g309850 Q6ZHP0_ORYSJ Receptor serine/threonine kinase-like OS=Oryza sativa subsp. japonica GN=OJ1191_G08.25 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g310000 DES2_SORBI Fatty acid desaturase DES2 OS=Sorghum bicolor GN=DES2 PE=2 SV=Length=38 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g310150 Hypothetical protein FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g310300 PTR14_ARATH Protein NRT1/ PTR FAMILY 7.3 OS=Arabidopsis thaliana GN=NPF7.3 PE=1 SV=Length=61 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g310400 A0A0D3F9Q2_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=22 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g310500 A0A0D9YXF2_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=14 FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g310550 Hypothetical protein FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g310600 OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN FN789-S Chr2 30134001 30470000 0 0 Deletion 335999 OsKitaake02g310700 CLU_ARATH Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=Length=140 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g072300 Q6Z912_ORYSJ Os08g0225400 protein OS=Oryza sativa subsp. japonica GN=Os08g0225400 PE=4 SV=Length=37 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g072400 GSTT3_ARATH Glutathione S-transferase T3 OS=Arabidopsis thaliana GN=GSTT3 PE=2 SV=Length=59 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g072500 BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g072650 C76B6_CATRO Geraniol 8-hydroxylase OS=Catharanthus roseus GN=CYP76B6 PE=1 SV=Length=49 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g072800 BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g072900 A0A0E0QFV1_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=15 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073000 BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073100 BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073400 BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073500 BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073600 BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073700 Q8H4F8_ORYSJ Os08g0227600 protein OS=Oryza sativa subsp. japonica GN=OJ1221_H04.139 PE=4 SV=Length=1 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073750 BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073800 BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073850 A0A0E0QFW3_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=21 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g073900 A0A0E0QFW3_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=21 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074000 Q6YZP3_ORYSJ Os08g0228900 protein OS=Oryza sativa subsp. japonica GN=Os08g0228900 PE=4 SV=Length=15 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074100 BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=Leng FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074200 A3BQV4_ORYSJ Os08g0229601 protein OS=Oryza sativa subsp. japonica GN=Os08g0229601 PE=4 SV=Length=28 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074300 E70E2_ARATH Exocyst complex component EXO70E2 OS=Arabidopsis thaliana GN=EXO70E2 PE=1 SV=Length=63 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074400 A0A0E0QFW8_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=37 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074300 E70E2_ARATH Exocyst complex component EXO70E2 OS=Arabidopsis thaliana GN=EXO70E2 PE=1 SV=Length=63 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074500 A0A0E0QFW9_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=14 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074600 Q6Z1S0_ORYSJ Os08g0230000 protein OS=Oryza sativa subsp. japonica GN=Os08g0230000 PE=2 SV=Length=18 FN789-S Chr8 7874001 8148000 0 0 Deletion 273999 OsKitaake08g074700 Y1686_ARATH Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV= FN789-S Chr2 11809852 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN789-S Chr2 12548274 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN789-S Chr2 18769483 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr3 7983178 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN789-S Chr3 22504005 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr4 28041731 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN789-S Chr4 28818515 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN789-S Chr5 12170535 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN789-S Chr7 12256876 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr7 13853563 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr8 9886410 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr8 19394613 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN789-S Chr9 1909134 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr9 17614403 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake09g133200 TGT_DANRE Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Danio rerio GN=qtrt1 PE=2 SV=Length FN789-S Chr9 20221922 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME Homo FN789-S Chr10 7447899 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr10 7503982 A-T 0 0 Single Base Substitution 0 INTRON Homo FN789-S Chr10 15254033 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr10 15924114 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr10 19098996 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN789-S Chr11 14093777 C-G 0 0 Single Base Substitution 0 INTRON Hetero FN789-S Chr11 25590206 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr11 26645616 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr12 202530 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr12 513737 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr12 15997201 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr12 18042743 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN789-S Chr12 19066397 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN789-S Chr12 24585481 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo