FN978-S Chr1 5098305 5098316 0 0 Deletion 11 INTERGENIC Hetero FN978-S Chr1 5195279 5195286 0 0 Deletion 7 INTRON Hetero FN978-S Chr1 21231019 21231029 0 0 Deletion 10 INTERGENIC Hetero FN978-S Chr2 12471850 12471876 0 0 Deletion 26 UTR_3_PRIME Hetero FN978-S Chr2 34988283 34988286 0 0 Deletion 3 UTR_3_PRIME Hetero FN978-S Chr2 36396967 36396976 0 0 Deletion 9 INTRON Hetero FN978-S Chr3 16414443 16414460 0 0 Deletion 17 INTERGENIC Homo FN978-S Chr3 16696217 16696227 0 0 Deletion 10 INTERGENIC Hetero FN978-S Chr3 25887752 25887753 0 0 Deletion 1 INTERGENIC Hetero FN978-S Chr4 2387553 2387560 0 0 Deletion 7 INTERGENIC Hetero FN978-S Chr5 20029931 20029942 0 0 Deletion 11 FRAME_SHIFT Homo OsKitaake05g159300 A0A0P0WM57_ORYSJ Os05g0409100 protein OS=Oryza sativa subsp. japonica GN=Os05g0409100 PE=4 SV=Length FN978-S Chr5 23617562 23617567 0 0 Deletion 5 INTERGENIC Hetero FN978-S Chr5 26378043 26378046 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION Hetero OsKitaake05g233100 Y2921_ARATH Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thali FN978-S Chr8 14993053 14993061 0 0 Deletion 8 INTRON Homo FN978-S Chr9 15278321 15278322 0 0 Deletion 1 SPLICE_SITE_REGION Homo FN978-S Chr10 1818203 1818211 0 0 Deletion 8 INTRON Hetero FN978-S Chr10 20985268 20985288 0 0 Deletion 20 UTR_3_PRIME Hetero FN978-S Chr11 1488752 1488757 0 0 Deletion 5 INTERGENIC Hetero FN978-S Chr11 19391281 19391284 0 0 Deletion 3 INTERGENIC Homo FN978-S Chr12 25849689 25849696 0 0 Deletion 7 INTERGENIC Hetero FN978-S Chr3 13799627 13799627 0 0 Insertion 1 Hetero 0 FN978-S Chr9 1932621 Chr6 24872628 0 Translocation 0 Hetero FN978-S Chr1 7500886 7929743 0 0 Inversion 0 Homo OsKitaake01g093900 CCA12_ORYSJ Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=Length=47 FN978-S Chr1 7500898 7929767 0 0 Inversion 0 Homo OsKitaake01g093900 CCA12_ORYSJ Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=Length=47 FN978-S Chr8 21354391 21621108 0 0 Inversion 0 Hetero OsKitaake08g160100 Q0J5J9_ORYSJ Os08g0430000 protein OS=Oryza sativa subsp. japonica GN=Os08g0430000 PE=2 SV=Length=146 FN978-S Chr8 21354521 21621113 0 0 Inversion 0 Homo OsKitaake08g160100 Q0J5J9_ORYSJ Os08g0430000 protein OS=Oryza sativa subsp. japonica GN=Os08g0430000 PE=2 SV=Length=146 FN978-S Chr1 7500898 7929767 0 0 Inversion 0 Homo OsKitaake01g099400 A2WMN9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01112 PE=4 SV=Len FN978-S Chr8 21354391 21621108 0 0 Inversion 0 Hetero OsKitaake08g163500 CSLAB_ORYSJ Probable mannan synthase 11 OS=Oryza sativa subsp. japonica GN=CSLA11 PE=2 SV=Length=57 FN978-S Chr8 21354521 21621113 0 0 Inversion 0 Homo OsKitaake08g163500 CSLAB_ORYSJ Probable mannan synthase 11 OS=Oryza sativa subsp. japonica GN=CSLA11 PE=2 SV=Length=57 FN978-S Chr1 10738649 11491498 0 0 Inversion 0 Homo FN978-S Chr3 30024352 30174678 0 0 Inversion 0 Hetero FN978-S Chr3 30045880 30174679 0 0 Inversion 0 Hetero FN978-S Chr3 30018001 30050000 0 0 Deletion 31999 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g285650 BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis th FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g285700 GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g285800 BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=Length=59 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g285700 GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g285800 BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=Length=59 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g285900 Q0J9J7_ORYSJ Os04g0648600 protein OS=Oryza sativa subsp. japonica GN=Os04g0648600 PE=2 SV=Length=26 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286000 A0A0P0WH76_ORYSJ Os05g0118600 protein OS=Oryza sativa subsp. japonica GN=Os05g0118600 PE=4 SV=Length FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286100 EME1_ORYSJ Crossover junction endonuclease EME1 OS=Oryza sativa subsp. japonica GN=EME1 PE=2 SV=Leng FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286300 HIP1_ORYSJ Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286400 ERF08_ARATH Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 S FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286501 Hypothetical protein FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286600 AP2_ARATH Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=Length=43 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286700 A0A0D9ZRM6_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=9 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286800 FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=Length=89 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286700 A0A0D9ZRM6_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=9 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286900 Hypothetical protein FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g286800 FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=Length=89 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g287000 Hypothetical protein FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g287100 WOX4_ORYSJ WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. japonica GN=WOX4 PE=2 SV=Length=23 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g287200 A0A0D3G0Z3_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=11 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g287301 A0A0E0PEX8_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=9 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g287400 Y5720_ARATH Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g287500 IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=Length=31 FN978-S Chr4 34374001 34519000 0 0 Deletion 144999 OsKitaake04g287600 ORYA_ORYSJ Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=Length=45 FN978-S Chr12 18474001 18491000 0 0 Deletion 16999 OsKitaake12g134600 A0A0E0RHI3_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=40 FN978-S Chr12 18474001 18491000 0 0 Deletion 16999 OsKitaake12g134701 A0A0E0RHI3_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=40 FN978-S Chr12 18474001 18491000 0 0 Deletion 16999 OsKitaake12g134800 A0A0E0RHI4_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=8 FN978-S Chr12 18474001 18491000 0 0 Deletion 16999 OsKitaake12g134900 FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE= FN978-S Chr12 18474001 18491000 0 0 Deletion 16999 OsKitaake12g135000 GIF3_ARATH GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=Length=22 FN978-S Chr1 1434964 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr1 7316544 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr1 10738426 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr1 22797581 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr2 4182161 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr2 7905923 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr2 19449394 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake02g190600 TSN1_ARATH Ribonuclease TUDOR 1 OS=Arabidopsis thaliana GN=TSN1 PE=1 SV=Length=99 FN978-S Chr2 31809371 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake02g323900 PXG5_ARATH Probable peroxygenase 5 OS=Arabidopsis thaliana GN=PXG5 PE=2 SV=Length=19 FN978-S Chr2 31811270 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN978-S Chr2 32871548 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr2 33421773 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr2 35770046 T-C 0 0 Single Base Substitution 0 INTRON Hetero FN978-S Chr3 16546623 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr3 17636243 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr3 19704901 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr3 33644885 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr3 34652454 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake03g377100 PHF1_ARATH SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=1 SV=Length=39 FN978-S Chr3 34652455 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake03g377100 PHF1_ARATH SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=1 SV=Length=39 FN978-S Chr4 28145480 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr4 33714881 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN978-S Chr5 2277074 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr6 2663243 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr6 4634077 G-C 0 0 Single Base Substitution 0 INTRON Hetero FN978-S Chr6 11877469 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr6 16540804 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr6 16540805 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr6 20038403 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr6 24213544 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr6 27663863 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr7 3697707 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr7 5838423 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN978-S Chr7 7050537 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr7 22481985 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr7 25713424 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr8 12749833 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr9 11295226 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr9 15203083 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN978-S Chr10 1759020 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr10 19712447 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake10g146000 A0A0E0IUP5_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=22 FN978-S Chr11 17923835 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr11 24832250 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN978-S Chr12 337977 G-T 0 0 Single Base Substitution 0 INTRON Hetero FN978-S Chr12 1981510 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo