W475-4-2 Chr1 2056137 2056138 0 0 Deletion 1 UTR_3_PRIME Homo W475-4-2 Chr2 19564513 19564514 0 0 Deletion 1 INTERGENIC Homo W475-4-2 Chr3 26084292 26084304 0 0 Deletion 12 INTERGENIC Homo W475-4-2 Chr4 17558001 17558006 0 0 Deletion 5 INTERGENIC Hetero W475-4-2 Chr4 35422541 35422545 0 0 Deletion 4 INTERGENIC Homo W475-4-2 Chr5 27062131 27062142 0 0 Deletion 11 FRAME_SHIFT Hetero OsKitaake05g242700 BGAL8_ORYSJ Beta-galactosidase 8 OS=Oryza sativa subsp. japonica GN=Os05g0539400 PE=2 SV=Length=67 W475-4-2 Chr6 13096514 13096524 0 0 Deletion 10 INTERGENIC Homo W475-4-2 Chr8 28563097 28563100 0 0 Deletion 3 UTR_3_PRIME Homo W475-4-2 Chr8 28768518 28768519 0 0 Deletion 1 INTERGENIC Homo W475-4-2 Chr9 12808149 12808150 0 0 Deletion 1 INTERGENIC Homo W475-4-2 Chr11 25009914 25009917 0 0 Deletion 3 INTERGENIC Homo W475-4-2 Chr11 29391846 29391851 0 0 Deletion 5 INTERGENIC Homo W475-4-2 Chr4 27390560 27390560 0 0 Insertion 3 INTERGENIC Hetero W475-4-2 Chr12 1485718 1486109 0 0 Deletion 391 Hetero 0 W475-4-2 Chr2 37176660 37176660 0 0 Insertion 6 Hetero 0 W475-4-2 Chr5 4881411 5705295 0 0 Inversion 0 Hetero W475-4-2 Chr5 5056210 5706244 0 0 Inversion 0 Hetero W475-4-2 Chr5 8087540 8764105 0 0 Inversion 0 Homo W475-4-2 Chr5 8087549 8163348 0 0 Inversion 0 Homo W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g039600 A0A0P0W7K5_ORYSJ Os04g0204900 protein OS=Oryza sativa subsp. japonica GN=Os04g0204900 PE=4 SV=Length W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g039700 R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040000 Hypothetical protein W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040300 SAG39_ORYSJ Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. japonica GN=SAG39 PE= W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040350 U74D1_ARATH UDP-glycosyltransferase 74D1 OS=Arabidopsis thaliana GN=UGT74D1 PE=1 SV=Length=45 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040400 U74E2_ARATH UDP-glycosyltransferase 74E2 OS=Arabidopsis thaliana GN=UGT74E2 PE=1 SV=Length=45 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040500 GLT2_CROSA Crocetin glucosyltransferase 2 OS=Crocus sativus GN=GLT2 PE=1 SV=Length=46 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040600 U74E2_ARATH UDP-glycosyltransferase 74E2 OS=Arabidopsis thaliana GN=UGT74E2 PE=1 SV=Length=45 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040700 U74F2_ARATH UDP-glycosyltransferase 74F2 OS=Arabidopsis thaliana GN=UGT74F2 PE=1 SV=Length=44 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040800 FBD40_ARATH FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana GN=At4g10400 PE=2 SV=Leng W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g040900 B9FDP5_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_13829 PE=4 SV=Length=88 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041050 FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=Length=45 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041200 FBD35_ARATH Putative FBD-associated F-box protein At1g78730 OS=Arabidopsis thaliana GN=At1g78730 PE= W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041400 SAG39_ORYSI Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica GN=OsI_14861 P W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041500 SAG39_ORYSI Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica GN=OsI_14861 P W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041600 FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=Length=45 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041700 A0A0P0W7S2_ORYSJ Os04g0208450 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os04g0208450 PE= W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041800 FBD30_ARATH FBD-associated F-box protein At5g60610 OS=Arabidopsis thaliana GN=At5g60610 PE=2 SV=Leng W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041900 FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=Lengt W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g041950 A0A0E0P5X5_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=11 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g042000 AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=Length=153 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g042100 AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=Length=151 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g042200 A0A0P0W7G9_ORYSJ Os04g0209600 protein OS=Oryza sativa subsp. japonica GN=Os04g0209600 PE=4 SV=Length W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g042300 A0A0E0P5Y0_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=16 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g042400 A0A0E0GY05_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=20 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g042800 A0A0E0BJR0_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=28 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g042900 A2XQI6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14897 PE=4 SV=Len W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g042800 A0A0E0BJR0_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=28 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g043000 VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic OS=Arabidopsis thaliana GN W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g043100 ORR42_ORYSJ Two-component response regulator ORR42 OS=Oryza sativa subsp. japonica GN=RR42 PE=3 SV=L W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g043200 ALB2_PEA Albumin-2 OS=Pisum sativum PE=2 SV=1Length=23 W475-4-2 Chr4 7797001 8426000 0 0 Deletion 628999 OsKitaake04g043300 Q7XP93_ORYSJ OSJNBa0021F22.7 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0021F22.7 PE=4 SV=Leng W475-4-2 Chr1 8652895 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr1 28023375 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr1 33396065 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr1 35016413 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr2 16230009 C-T 0 0 Single Base Substitution 0 INTRON Homo W475-4-2 Chr2 24158699 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr3 19749478 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake03g229200 Q10IL6_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica G W475-4-2 Chr4 3635441 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero W475-4-2 Chr4 4305010 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero W475-4-2 Chr4 6421495 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero W475-4-2 Chr4 11056046 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero W475-4-2 Chr4 17161434 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME Homo W475-4-2 Chr4 32195768 T-C 0 0 Single Base Substitution 0 INTRON Homo W475-4-2 Chr4 32724463 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr4 32724465 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr4 35685779 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr4 36766586 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr5 17096226 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr5 17267392 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr5 27197295 T-A 0 0 Single Base Substitution 0 INTRON Hetero W475-4-2 Chr6 8962630 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr6 16159298 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr6 22289762 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr7 25761216 G-A 0 0 Single Base Substitution 0 INTRON Homo W475-4-2 Chr8 15009943 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr9 1290082 C-T 0 0 Single Base Substitution 0 INTRON Hetero W475-4-2 Chr9 21708918 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Hetero W475-4-2 Chr10 275139 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero W475-4-2 Chr10 20632280 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME Homo W475-4-2 Chr11 20544219 C-T 0 0 Single Base Substitution 0 INTRON Hetero W475-4-2 Chr11 29585430 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo W475-4-2 Chr12 12025277 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo