FN-249 Chr1 13611652 13611659 0 0 Deletion 7 FN-249 Chr1 15515865 15515869 0 0 Deletion 4 FN-249 Chr1 22728310 22728312 0 0 Deletion 2 LOC_Os01g40250 down-regulated in metastasis family protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51650 retrotransposon protein, putative, unclassified, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51660 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51670 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51680 hypothetical protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51690 WRKY26, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51700 ras-related protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51710 zinc knuckle domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51720 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51730 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51735 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51740 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51754 alpha-amylase precursor, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51770 outer mitochondrial membrane porin, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51780 auxin efflux carrier component, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51790 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51800 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51810 pentatricopeptide, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51830 retrotransposon protein, putative, Ty3-gypsy subclass FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51840 IQ calmodulin-binding motif family protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51850 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51860 violaxanthin de-epoxidase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51870 methyltransferase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51880 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51890 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51904 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51920 phosphotransferase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51930 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51940 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51950 retrotransposon protein, putative, unclassified, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51960 hypothetical protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51970 hypothetical protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51980 alliin lyase precursor, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g51990 AN1-like zinc finger domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52000 retrotransposon protein, putative, unclassified, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52010 alliin lyase precursor, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52020 subtilase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52030 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52050 systemin receptor SR160 precursor, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52060 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52070 potassium channel AKT1, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52080 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52090 transcription factor like protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52100 DUF581 domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52110 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52120 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52130 sulfate transporter, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52140 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52150 hypothetical protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52160 heavy metal-associated domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52170 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52180 lipase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52190 aspartic proteinase nepenthesin precursor, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52200 mitochondrial ATP synthase g subunit family protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52214 ubiquinone oxidoreductase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52230 phosphoethanolamine/phosphocholine phosphatase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52240 chlorophyll A-B binding protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52250 starch synthase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52260 serine acetyltransferase protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52270 NB-ARC domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52280 NB-ARC domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52290 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52304 NB-ARC domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52320 NB-ARC domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52330 NB-ARC domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52340 NB-ARC domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52370 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52380 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52390 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52400 bacterial transferase hexapeptide domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52410 myb-like DNA-binding domain containing protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52420 conserved hypothetical protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52430 hAT dimerisation domain-containing protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52440 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52450 hexokinase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52460 regulator of ribonuclease, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52470 elongation factor, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52480 senescence-associated protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52490 40S ribosomal protein S24, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52500 NADP-dependent malic enzyme, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52514 B3 DNA binding domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52530 phosphoribosyl transferase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52540 B3 DNA binding domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52550 ABC transporter, ATP-binding protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52560 Plant PDR ABC transporter associated domain containing protein, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52570 lachrymatory factor synthase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52590 hypothetical protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52594 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52610 membrane associated DUF588 domain containing protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52630 regulator of chromosome condensation, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52640 suppressor of phythchrome A, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52650 POEI44 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52660 POEI51 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52670 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52680 OsMADS32 - MADS-box family gene with MIKCc type-box, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52690 retrotransposon protein, putative, unclassified, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52700 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52710 glycosyl transferase 8 domain containing protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52720 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52730 DUF584 domain containing protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52740 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52750 OsSub3 - Putative Subtilisin homologue, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52760 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52770 GDSL-like lipase/acylhydrolase, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52780 HVA22, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52790 cytochrome P450 72A1, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52800 cytochrome P450 72A1, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52810 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52820 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52830 DUF1264 domain containing protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52840 transposon protein, putative, unclassified, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52851 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52864 transmembrane protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52880 leucine-rich repeat family protein, putative, expressed FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52890 expressed protein FN-249 Chr1 29686001 30414000 0 0 Deletion 728000 LOC_Os01g52900 expressed protein FN-249 Chr10 2032071 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g04290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-249 Chr10 20539392 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g38450 receptor-like protein kinase 2 precursor, putative, expressed FN-249 Chr10 20539393 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g38450 receptor-like protein kinase 2 precursor, putative, expressed FN-249 Chr10 5170451 5170452 0 0 Deletion 1 FN-249 Chr11 21634693 21634697 0 0 Deletion 4 LOC_Os11g36660 expressed protein FN-249 Chr12 13013257 13013274 0 0 Deletion 17 FN-249 Chr2 20621142 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr2 2111402 A-T 0 0 Single Base Substitution 0 INTRON HET FN-249 Chr2 24696815 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr2 24696816 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr2 25493739 G-A 0 0 Single Base Substitution 0 INTRON HET FN-249 Chr2 28131721 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr2 28265966 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr2 28265973 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr2 29384984 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g48010 nuclear matrix constituent protein 1-like, putative, expressed FN-249 Chr2 29790112 29790113 0 0 Deletion 1 FN-249 Chr2 35320870 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN-249 Chr2 35320871 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN-249 Chr3 10407047 10407048 0 0 Deletion 1 FN-249 Chr3 17284824 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-249 Chr3 24130349 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN-249 Chr3 26742332 26742333 0 0 Deletion 1 FN-249 Chr3 31421523 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr4 11786631 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN-249 Chr4 11897427 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN-249 Chr4 11979210 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr4 16917956 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-249 Chr4 8790574 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN-249 Chr5 24249149 24490250 0 0 Inversion 241101 FN-249 Chr5 9237001 9247000 0 0 Deletion 10000 LOC_Os05g16315 translation initiation factor IF-2, putative, expressed FN-249 Chr5 9237001 9247000 0 0 Deletion 10000 LOC_Os05g16320 expressed protein FN-249 Chr5 9259001 9316000 0 0 Deletion 57000 LOC_Os05g16350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-249 Chr5 9259001 9316000 0 0 Deletion 57000 LOC_Os05g16360 expressed protein FN-249 Chr5 9259001 9316000 0 0 Deletion 57000 LOC_Os05g16370 retrotransposon protein, putative, unclassified, expressed FN-249 Chr5 9259001 9316000 0 0 Deletion 57000 LOC_Os05g16380 retrotransposon protein, putative, unclassified, expressed FN-249 Chr5 9259001 9316000 0 0 Deletion 57000 LOC_Os05g16390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-249 Chr5 9259001 9316000 0 0 Deletion 57000 LOC_Os05g16395 expressed protein FN-249 Chr5 9259001 9316000 0 0 Deletion 57000 LOC_Os05g16400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-249 Chr5 9259001 9316000 0 0 Deletion 57000 LOC_Os05g16410 retrotransposon, putative, centromere-specific, expressed FN-249 Chr6 3670457 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-249 Chr7 12649102 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr7 12738840 12738843 0 0 Deletion 3 FN-249 Chr7 19537966 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr7 27694509 27694655 0 0 Deletion 146 LOC_Os07g46410 bifunctional thioredoxin reductase/thioredoxin, putative, expressed FN-249 Chr7 29563869 29563869 0 0 Insertion 4 FN-249 Chr8 12695180 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-249 Chr8 22701538 22701571 0 0 Deletion 33 FN-249 Chr8 430654 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN-249 Chr9 3124451 3124463 0 0 Deletion 12 LOC_Os09g06560 WD domain, G-beta repeat domain containing protein, expressed FN-249 Chr9 5624693 C-A 0 0 Single Base Substitution 0 INTERGENIC HET