FN-52 Chr1 14885665 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr1 14962819 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr1 17595017 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr1 18970269 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr1 20254792 20254822 0 0 Deletion 30 FN-52 Chr1 25550407 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr1 31864775 31864780 0 0 Deletion 5 LOC_Os01g55350 phosphoenolpyruvate carboxylase, putative, expressed FN-52 Chr1 32393360 32393361 0 0 Deletion 1 FN-52 Chr1 34039124 34039128 0 0 Deletion 4 FN-52 Chr1 6330260 A-T 0 0 Single Base Substitution 0 INTRON HET FN-52 Chr10 11674568 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr10 14255429 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr10 1481899 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr11 10798417 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr11 16907724 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr11 25263515 25263531 0 0 Deletion 16 LOC_Os11g42010 NBS-LRR type disease resistance protein, putative, expressed FN-52 Chr12 15826836 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr2 29672294 29672306 0 0 Deletion 12 FN-52 Chr2 9443513 9443526 0 0 Deletion 13 FN-52 Chr3 10380023 10380043 0 0 Deletion 20 FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19370 CPuORF4 - conserved peptide uORF-containing transcript, expressed FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19375 expressed protein FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19380 calvin cycle protein CP12, putative, expressed FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19390 TENA/THI-4 family protein, putative, expressed FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19400 expressed protein FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19410 OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19420 nicotianamine synthase, putative, expressed FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19427 nicotianamine synthase, putative, expressed FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19436 expressed protein FN-52 Chr3 10904001 10943000 0 0 Deletion 39000 LOC_Os03g19452 SMP-30/Gluconolaconase/LRE domain protein, putative, expressed FN-52 Chr3 11561829 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g20430 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8, putative, expressed FN-52 Chr3 17949863 17949864 0 0 Deletion 1 LOC_Os03g31510 cysteine proteinase inhibitor 8 precursor, putative, expressed FN-52 Chr3 22847910 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr3 32021260 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr3 34237063 34237084 0 0 Deletion 21 FN-52 Chr3 36308348 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr4 10874556 G-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os04g19540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 12321483 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr4 12321485 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr4 20011748 A-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN-52 Chr4 24784483 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN-52 Chr4 30229311 A-G 0 0 Single Base Substitution 0 INTRON HET FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g05940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g05950 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g05960 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g05970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g05980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g05990 transposon protein, putative, CACTA, En/Spm sub-class FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06020 transposon protein, putative, CACTA, En/Spm sub-class FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06050 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06090 cysteine-rich receptor-like protein kinase 37 precursor, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06100 transposon protein, putative, CACTA, En/Spm sub-class FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06144 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06170 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06180 transposon protein, putative, CACTA, En/Spm sub-class FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06200 transposon protein, putative, CACTA, En/Spm sub-class FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06210 cysteine-rich receptor-like protein kinase 36 precursor, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06230 transposon protein, putative, CACTA, En/Spm sub-class FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06244 kinase, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06260 transposon protein, putative, CACTA, En/Spm sub-class FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06270 hypothetical protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06280 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06290 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06300 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06310 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06320 retrotransposon, putative, centromere-specific, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06330 retrotransposon, putative, centromere-specific FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06340 MEGL11 - Maternally expressed gene MEG family protein precursor, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06350 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06374 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06380 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06388 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06390 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06400 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06402 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06420 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06429 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06440 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06460 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06480 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06490 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06500 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06510 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06520 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06530 MEGL12 - Maternally expressed gene MEG family protein precursor, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06540 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06550 retrotransposon, putative, centromere-specific, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06560 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06580 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06590 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06600 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06640 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06650 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06660 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06670 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06700 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06710 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06734 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06770 argonaute, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06780 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06790 2-aminoethanethiol dioxygenase, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06800 hypothetical protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06820 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06830 hypothetical protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06840 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06850 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06860 peroxidase 28 precursor, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06870 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06879 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06900 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06910 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06920 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06940 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06950 conserved hypothetical protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06960 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06970 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06980 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g06990 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07000 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07040 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07070 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07080 retrotransposon protein, putative, unclassified FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07090 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07100 retrotransposon protein, putative, unclassified, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07110 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07120 retrotransposon, putative, centromere-specific FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07130 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07140 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07150 AGAP002737-PA, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07190 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07200 S-domain receptor-like protein kinase, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07210 hypothetical protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07220 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07230 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07250 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07260 expressed protein FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07280 AGAP002737-PA, putative, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07290 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07310 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN-52 Chr4 3070001 3900000 0 0 Deletion 830000 LOC_Os04g07330 retrotransposon protein, putative, Ty3-gypsy subclass FN-52 Chr4 30700933 A-T 0 0 Single Base Substitution 0 INTRON HET FN-52 Chr4 9762200 9762201 0 0 Deletion 1 FN-52 Chr5 23163552 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr5 23163554 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr6 20507029 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN-52 Chr6 8095325 8095344 0 0 Deletion 19 FN-52 Chr7 13756122 13756276 0 0 Deletion 154 FN-52 Chr7 21693352 21693353 0 0 Deletion 1 FN-52 Chr8 21867363 21867367 0 0 Deletion 4 FN-52 Chr8 3542717 3542723 0 0 Deletion 6 FN-52 Chr8 5317279 5317282 0 0 Deletion 3 LOC_Os08g09170 expressed protein