FN1015-S Chr1 13147168 13147168 0 0 Insertion 1 FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44069 glycerol-3-phosphate acyltransferase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44090 X8 domain containing protein, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44100 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44110 serine/threonine-protein kinase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44120 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44130 aspartic proteinase oryzasin-1 precursor, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44140 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44160 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44170 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44180 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44190 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44200 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44210 50S ribosomal protein L31, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44220 glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44230 transcription factor X1, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44240 zinc finger, C3HC4 type domain containing protein, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44250 CBS domain containing membrane protein, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44260 dihydroflavonol-4-reductase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44270 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44290 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44310 dnaJ domain containing protein, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44320 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44330 laccase precursor protein, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44340 pectinesterase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44350 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44360 CBS domain containing membrane protein, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44370 MYB family transcription factor, putative FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44380 hypothetical protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44390 MYB family transcription factor, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44394 mitotic checkpoint protein, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44430 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44940 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44950 AMP-binding enzyme, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44960 hydrolase, alpha/beta fold family domain containing protein, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44970 polygalacturonase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44980 peptide deformylase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g44990 ercc6 protein, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45000 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45010 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45020 F-box protein interaction domain containing protein, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45040 Leucine rich repeat N-terminal domain containing protein, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45060 polygalacturonase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45070 peptide deformylase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45080 expressed protein FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45090 MYB family transcription factor, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45100 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45110 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN1015-S Chr1 25241001 25604000 0 0 Deletion 363000 LOC_Os01g45120 expressed protein FN1015-S Chr1 25603645 26085728 0 0 Inversion 482083 LOC_Os01g45120 expressed protein FN1015-S Chr1 25824230 26085247 0 0 Inversion 261017 FN1015-S Chr1 33188751 33188754 0 0 Deletion 3 LOC_Os01g57420 diacylglycerol kinase, putative, expressed FN1015-S Chr1 59833 352091 0 0 Inversion 292258 LOC_Os01g01115 pentatricopeptide, putative, expressed FN1015-S Chr1 59833 352091 0 0 Inversion 292258 LOC_Os01g01689 phosphatidylinositol 3- and 4-kinase family protein, expressed FN1015-S Chr1 6160503 6160503 0 0 Insertion 4 FN1015-S Chr10 1080963 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06180 transposon protein, putative, unclassified FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06190 transposon protein, putative, unclassified FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06200 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06210 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06220 retrotransposon protein, putative, Ty3-gypsy subclass FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06240 transposon protein, putative, unclassified, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06260 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06280 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06300 retrotransposon protein, putative, unclassified FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06320 retrotransposon protein, putative, Ty3-gypsy subclass FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06360 retrotransposon protein, putative, Ty3-gypsy subclass FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06390 retrotransposon protein, putative, Ty3-gypsy subclass FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06420 retrotransposon protein, putative, unclassified FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06440 transposon protein, putative, unclassified FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06460 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06470 retrotransposon protein, putative, Ty3-gypsy subclass FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06480 retrotransposon protein, putative, Ty3-gypsy subclass FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06490 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06500 expressed protein FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06510 cyclin-dependent kinase G-1, putative, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06540 vesicle-associated membrane protein, putative, expressed FN1015-S Chr10 3148001 3364000 0 0 Deletion 216000 LOC_Os10g06550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr10 3159374 Chr3 8152502 0 Translocation 0 LOC_Os10g06170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr11 15952945 Chr7 11854549 0 Translocation 0 FN1015-S Chr11 17174594 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g29610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1015-S Chr11 25032988 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41690 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr11 871553 871553 0 0 Insertion 2 FN1015-S Chr11 8755327 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1015-S Chr12 15947415 Chr4 23954007 0 Translocation 0 FN1015-S Chr12 17049047 17049048 0 0 Deletion 1 FN1015-S Chr12 21210817 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g34850 Fibronectin type III domain containing protein, expressed FN1015-S Chr12 23446097 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1015-S Chr12 23659558 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr12 426311 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1015-S Chr12 7238252 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1015-S Chr2 11039441 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr2 22765382 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1015-S Chr2 29689879 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr2 35214007 35214011 0 0 Deletion 4 FN1015-S Chr2 9288731 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g16330 xa1, putative, expressed FN1015-S Chr3 17271090 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1015-S Chr3 20825427 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr3 25970762 25970771 0 0 Deletion 9 FN1015-S Chr3 28883911 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1015-S Chr3 34529598 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN1015-S Chr3 35276356 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr4 17718889 17718889 0 0 Insertion 4 FN1015-S Chr4 25833927 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g43660 expressed protein FN1015-S Chr4 4868419 4868424 0 0 Deletion 5 FN1015-S Chr5 24811987 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1015-S Chr5 26064374 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr5 27219533 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1015-S Chr5 27548904 27548905 0 0 Deletion 1 FN1015-S Chr5 2962415 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g05890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1015-S Chr5 3248952 3248953 0 0 Deletion 1 FN1015-S Chr5 7147194 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr6 10493040 10493040 0 0 Insertion 2 FN1015-S Chr6 11024271 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g19370 cadmium tolerance factor, putative, expressed FN1015-S Chr6 11024272 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g19370 cadmium tolerance factor, putative, expressed FN1015-S Chr6 14476602 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1015-S Chr6 20595497 20595513 0 0 Deletion 16 FN1015-S Chr6 29614001 29670000 0 0 Deletion 56000 LOC_Os06g48920 expressed protein FN1015-S Chr6 29614001 29670000 0 0 Deletion 56000 LOC_Os06g48930 expressed protein FN1015-S Chr6 29614001 29670000 0 0 Deletion 56000 LOC_Os06g48940 GHMP kinases ATP-binding protein, putative, expressed FN1015-S Chr6 29614001 29670000 0 0 Deletion 56000 LOC_Os06g48950 auxin response factor 19, putative, expressed FN1015-S Chr6 29614001 29670000 0 0 Deletion 56000 LOC_Os06g48960 AIG2-like family domain containing protein, expressed FN1015-S Chr6 5957860 G-T 0 0 Single Base Substitution 0 INTRON HET FN1015-S Chr7 17882978 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g30250 RFT1, putative, expressed FN1015-S Chr7 24712722 24712732 0 0 Deletion 10 FN1015-S Chr7 4552171 4552177 0 0 Deletion 6 LOC_Os07g08810 expressed protein FN1015-S Chr7 9426261 C-T 0 0 Single Base Substitution 0 INTRON HET FN1015-S Chr8 1303218 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g02990 retrotransposon protein, putative, unclassified, expressed FN1015-S Chr8 13163526 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr8 13163527 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr8 1340602 Chr1 26085247 0 Translocation 0 FN1015-S Chr8 1340605 Chr1 26085250 0 Translocation 0 FN1015-S Chr8 22530154 22530155 0 0 Deletion 1 LOC_Os08g35710 expressed protein FN1015-S Chr8 23816216 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr8 25275027 25275032 0 0 Deletion 5 LOC_Os08g39890 OsSPL14 - SBP-box gene family member, expressed FN1015-S Chr8 5533020 5533020 0 0 Insertion 2 FN1015-S Chr9 16342011 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr9 16637694 16637694 0 0 Insertion 1 FN1015-S Chr9 4680415 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1015-S Chr9 9132111 9132111 0 0 Insertion 7