FN1022-S Chr1 10566339 10566350 0 0 Deletion 11 FN1022-S Chr1 10669338 10669343 0 0 Deletion 5 FN1022-S Chr1 14968033 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1022-S Chr1 18326070 G-C 0 0 Single Base Substitution 0 INTRON HET FN1022-S Chr1 19204175 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr1 25737710 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1022-S Chr1 28846182 28846183 0 0 Deletion 1 FN1022-S Chr1 31596999 31597014 0 0 Deletion 15 LOC_Os01g54930 one zinc finger protein, putative, expressed FN1022-S Chr1 8687820 8687824 0 0 Deletion 4 FN1022-S Chr1 9715775 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr10 11180781 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1022-S Chr10 13898132 14763341 0 0 Inversion 865209 LOC_Os10g26630 CSLA2 - cellulose synthase-like family A; mannan synthase, expressed FN1022-S Chr10 13898135 Chr2 17673926 0 Translocation 0 LOC_Os10g26630 CSLA2 - cellulose synthase-like family A; mannan synthase, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26650 transposon protein, putative, unclassified, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26660 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26670 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26680 pectinesterase, putative, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26690 structural constituent of ribosome, putative, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26700 YGL010w, putative, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26710 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26720 exonuclease, putative, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26730 exonuclease, putative, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26740 hypothetical protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26750 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26760 transposon protein, putative, CACTA, En/Spm sub-class FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26780 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26800 hypothetical protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26810 retrotransposon protein, putative, LINE subclass, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26820 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26830 retrotransposon protein, putative, unclassified, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26840 transposon protein, putative, unclassified FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26850 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26859 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26890 hypothetical protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26930 retrotransposon protein, putative, unclassified, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26940 BURP domain containing protein, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26950 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26960 retrotransposon protein, putative, unclassified FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26980 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g26990 OsFBK23 - F-box domain and kelch repeat containing protein, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27000 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27010 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27020 transposon protein, putative, Pong sub-class, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27030 retrotransposon protein, putative, unclassified, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27040 retrotransposon protein, putative, unclassified, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27050 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27060 SET domain protein 123, putative, expressed FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27080 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27090 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27100 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27110 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27120 expressed protein FN1022-S Chr10 13910001 14293000 0 0 Deletion 383000 LOC_Os10g27210 hypothetical protein FN1022-S Chr10 13910161 Chr2 20973219 0 Translocation 0 LOC_Os02g34970 no apical meristem protein, putative, expressed FN1022-S Chr10 14292556 Chr2 21163983 0 Translocation 0 FN1022-S Chr10 14763351 Chr2 21164684 0 Translocation 0 FN1022-S Chr10 18925645 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g35400 retrotransposon protein, putative, unclassified, expressed FN1022-S Chr10 672949 672952 0 0 Deletion 3 FN1022-S Chr11 12896705 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr11 19086600 G-A 0 0 Single Base Substitution 0 INTRON HET FN1022-S Chr11 27741462 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr11 4323098 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g08230 DEFL46 - Defensin and Defensin-like DEFL family, expressed FN1022-S Chr11 588385 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr11 7365467 A-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os11g13440 RGH1A, putative, expressed FN1022-S Chr12 11472904 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g19700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1022-S Chr12 12529197 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1022-S Chr12 12979241 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr12 14571197 14571210 0 0 Deletion 13 FN1022-S Chr12 25174117 25174117 0 0 Insertion 2 FN1022-S Chr2 11648432 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr2 12483282 12483294 0 0 Deletion 12 FN1022-S Chr2 18667295 18667295 0 0 Insertion 1 LOC_Os02g31170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1022-S Chr2 20952073 20973774 0 0 Deletion 21701 LOC_Os02g34930 expressed protein FN1022-S Chr2 20952073 20973774 0 0 Deletion 21701 LOC_Os02g34940 OsPDIL1-3 protein disulfide isomerase PDIL1-3, expressed FN1022-S Chr2 20952073 20973774 0 0 Deletion 21701 LOC_Os02g34950 ATP binding protein, putative, expressed FN1022-S Chr2 20952073 20973774 0 0 Deletion 21701 LOC_Os02g34960 pentatricopeptide, putative, expressed FN1022-S Chr2 20952073 20973774 0 0 Deletion 21701 LOC_Os02g34970 no apical meristem protein, putative, expressed FN1022-S Chr2 20952591 21164650 0 0 Inversion 212059 FN1022-S Chr2 20973214 21163980 0 0 Inversion 190766 LOC_Os02g34970 no apical meristem protein, putative, expressed FN1022-S Chr2 30176113 30176114 0 0 Deletion 1 FN1022-S Chr2 30218480 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr2 31187972 31187974 0 0 Deletion 2 FN1022-S Chr2 33177614 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr2 34487095 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr2 3579220 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr2 7108361 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr3 13600720 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1022-S Chr3 19507494 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1022-S Chr3 20242793 20242799 0 0 Deletion 6 LOC_Os03g36530 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN1022-S Chr3 22313537 22313537 0 0 Insertion 3 FN1022-S Chr3 2423051 G-T 0 0 Single Base Substitution 0 INTRON HET FN1022-S Chr3 26929899 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr3 31599808 31599810 0 0 Deletion 2 LOC_Os03g55530 HLS, putative, expressed FN1022-S Chr4 12914757 Chr2 20952485 0 Translocation 0 FN1022-S Chr4 12914771 Chr2 20952075 0 Translocation 0 FN1022-S Chr4 13350602 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g23360 retrotransposon protein, putative, unclassified, expressed FN1022-S Chr4 16051970 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr4 20794452 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr4 21149156 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr4 22440294 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr4 23923986 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1022-S Chr4 29884952 29884953 0 0 Deletion 1 LOC_Os04g50100 RING-H2 finger protein ATL5G, putative, expressed FN1022-S Chr4 33511067 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1022-S Chr4 34869379 C-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN1022-S Chr4 351665 351665 0 0 Insertion 2 FN1022-S Chr4 9009536 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g16570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1022-S Chr4 9408180 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr5 14245994 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1022-S Chr5 17246853 17246861 0 0 Deletion 8 FN1022-S Chr5 18028804 18028805 0 0 Deletion 1 FN1022-S Chr5 18602499 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr5 21012802 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr5 21506239 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr5 22411100 Chr1 28240038 0 Translocation 0 LOC_Os05g38219 expressed protein FN1022-S Chr5 22411102 Chr1 28241032 0 Translocation 0 LOC_Os05g38219 expressed protein FN1022-S Chr5 28115451 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr5 6609905 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr5 9547274 T-C 0 0 Single Base Substitution 0 INTRON HET FN1022-S Chr6 13641156 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr6 8021096 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr7 18276752 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr7 20140549 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1022-S Chr7 20374811 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1022-S Chr7 23382720 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr7 4217096 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr7 4935320 4935321 0 0 Deletion 1 FN1022-S Chr7 8766011 8766023 0 0 Deletion 12 LOC_Os07g15210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1022-S Chr8 10370881 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr8 10774490 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr8 10963959 10963965 0 0 Deletion 6 FN1022-S Chr8 13937646 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1022-S Chr8 1798990 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1022-S Chr8 2084270 Chr1 24677418 0 Translocation 0 FN1022-S Chr8 2084274 2112217 0 0 Inversion 27943 FN1022-S Chr8 2084286 2468705 0 0 Inversion 384419 FN1022-S Chr8 2100661 3004339 0 0 Inversion 903678 FN1022-S Chr8 23629541 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04890 OsCML32 - Calmodulin-related calcium sensor protein, expressed FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04900 hypothetical protein FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04910 expressed protein FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04920 OsDegp11 - Putative Deg protease homologue, expressed FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04930 retrotransposon protein, putative, Ty3-gypsy subclass FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04939 retrotransposon protein, putative, Ty3-gypsy subclass FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04950 retrotransposon protein, putative, Ty3-gypsy subclass FN1022-S Chr8 2469001 2552000 0 0 Deletion 83000 LOC_Os08g04970 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1022-S Chr8 2551984 3004346 0 0 Inversion 452362 FN1022-S Chr8 26323932 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr8 26602117 T-C 0 0 Single Base Substitution 0 INTRON HET FN1022-S Chr8 2976757 2976763 0 0 Deletion 6 FN1022-S Chr8 4115814 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr8 4356173 A-T 0 0 Single Base Substitution 0 INTRON HET FN1022-S Chr9 12110114 12110115 0 0 Deletion 1 LOC_Os09g20200 expressed protein FN1022-S Chr9 1915805 1915809 0 0 Deletion 4 FN1022-S Chr9 20309907 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1022-S Chr9 3528595 G-A 0 0 Single Base Substitution 0 INTERGENIC HET