FN1026-S Chr1 20092257 20092258 0 0 Deletion 1 FN1026-S Chr1 27084006 27084016 0 0 Deletion 10 FN1026-S Chr1 31248985 C-A 0 0 Single Base Substitution 0 INTRON HET FN1026-S Chr1 36526727 36526727 0 0 Insertion 1 FN1026-S Chr1 37984040 G-A 0 0 Single Base Substitution 0 INTRON HET FN1026-S Chr1 5847464 5847465 0 0 Deletion 1 FN1026-S Chr1 9069092 9069094 0 0 Deletion 2 LOC_Os01g16100 translin, putative, expressed FN1026-S Chr10 16607758 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1026-S Chr10 20000424 C-T 0 0 Single Base Substitution 0 INTRON HET FN1026-S Chr10 22264559 22264866 0 0 Deletion 307 FN1026-S Chr10 22264582 Chr1 5999629 0 Translocation 0 FN1026-S Chr10 22264583 Chr6 4640226 0 Translocation 0 FN1026-S Chr10 533125 590023 0 0 Inversion 56898 LOC_Os10g01820 expressed protein FN1026-S Chr10 533138 590022 0 0 Inversion 56884 LOC_Os10g01820 expressed protein FN1026-S Chr10 567693 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g01880 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr11 15865780 15865800 0 0 Deletion 20 FN1026-S Chr11 5320383 Chr4 14950536 0 Translocation 0 FN1026-S Chr12 14880557 14880558 0 0 Deletion 1 FN1026-S Chr12 17213776 A-T 0 0 Single Base Substitution 0 INTRON HET FN1026-S Chr12 25546509 Chr8 2637767 0 Translocation 0 FN1026-S Chr12 25547630 Chr2 8137784 0 Translocation 0 LOC_Os02g14730 ubiquitin carboxyl-terminal hydrolase family protein, expressed FN1026-S Chr12 2993061 2993073 0 0 Deletion 12 LOC_Os12g06270 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr12 9585983 9585983 0 0 Insertion 2 FN1026-S Chr2 11173006 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr2 12095564 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1026-S Chr2 14294313 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr2 1615511 1615512 0 0 Deletion 1 FN1026-S Chr2 26107462 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1026-S Chr2 7380757 7380758 0 0 Deletion 1 FN1026-S Chr3 21303494 21303495 0 0 Deletion 1 LOC_Os03g38375 expressed protein FN1026-S Chr3 23269234 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr3 34352986 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1026-S Chr3 36148604 36148604 0 0 Insertion 2 FN1026-S Chr4 14268001 14314000 0 0 Deletion 46000 LOC_Os04g24830 expressed protein FN1026-S Chr4 14268001 14314000 0 0 Deletion 46000 LOC_Os04g24840 glycosyltransferase, putative, expressed FN1026-S Chr4 14268001 14314000 0 0 Deletion 46000 LOC_Os04g24850 cytokinin-O-glucosyltransferase 2, putative, expressed FN1026-S Chr4 14317018 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25760 retrotransposon protein, putative, unclassified FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25770 retrotransposon protein, putative, unclassified FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25780 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25784 expressed protein FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25790 expressed protein FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25800 cytokinin-O-glucosyltransferase 2, putative, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25810 retrotransposon protein, putative, unclassified FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25820 glycosyltransferase, putative, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25830 expressed protein FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25840 OsFBX128 - F-box domain containing protein, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25860 hypothetical protein FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25870 OsMADS84 - MADS-box family gene with M-gamma type-box, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25880 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25890 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25900 go35 NBS-LRR, putative, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25910 hypothetical protein FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25920 OsMADS85 - MADS-box family gene with M-gamma type-box, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25930 OsMADS99 - MADS-box family gene with M-gamma type-box FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25950 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25960 expressed protein FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25970 cytokinin-O-glucosyltransferase 2, putative, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25980 cytokinin-O-glucosyltransferase 2, putative, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g25990 tRNA methyltransferase complex GCD14 subunit, putative, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26020 transposon protein, putative, CACTA, En/Spm sub-class FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26030 retrotransposon protein, putative, unclassified FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26040 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26050 hypothetical protein FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26080 hypothetical protein FN1026-S Chr4 14940001 15193000 0 0 Deletion 253000 LOC_Os04g26090 expressed protein FN1026-S Chr4 14940002 15225349 0 0 Inversion 285347 FN1026-S Chr4 14940182 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr4 14940183 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr5 13475446 13475448 0 0 Deletion 2 FN1026-S Chr5 14325403 14327669 0 0 Inversion 2266 FN1026-S Chr5 14541297 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN1026-S Chr5 15442838 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g26580 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr5 15442839 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g26580 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr5 23389221 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr5 27961822 27961824 0 0 Deletion 2 FN1026-S Chr5 28297593 28297594 0 0 Deletion 1 FN1026-S Chr5 2937970 Chr4 15231989 0 Translocation 0 LOC_Os04g26130 transposon protein, putative, Mariner sub-class, expressed FN1026-S Chr5 2937970 Chr4 15231989 0 Translocation 0 LOC_Os05g05860 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr5 3232795 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1026-S Chr5 6279216 6279219 0 0 Deletion 3 FN1026-S Chr6 15785801 15785805 0 0 Deletion 4 LOC_Os06g27860 poor homologous synapsis 1 protein, putative, expressed FN1026-S Chr6 19433937 19433937 0 0 Insertion 2 FN1026-S Chr6 21111909 21111913 0 0 Deletion 4 FN1026-S Chr6 25520915 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr6 28604747 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g47170 retrotransposon protein, putative, unclassified, expressed FN1026-S Chr6 4640248 Chr1 5999921 0 Translocation 0 FN1026-S Chr6 4758682 4758719 0 0 Deletion 37 FN1026-S Chr6 5737627 Chr1 5999629 0 Translocation 0 FN1026-S Chr6 8715184 8715185 0 0 Deletion 1 LOC_Os06g15350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr7 12546638 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN1026-S Chr7 20164188 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1026-S Chr7 23272887 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr7 27911963 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g46690 PHD-finger family protein, expressed FN1026-S Chr7 6890374 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr8 10351905 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr8 10785698 10885645 0 0 Inversion 99947 FN1026-S Chr8 11142083 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24470 expressed protein FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24480 HAT family dimerisation domain containing protein, identical, putative, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24490 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24510 hypothetical protein FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24540 retrotransposon protein, putative, unclassified FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24580 retrotransposon protein, putative, Ty3-gypsy subclass FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24600 expressed protein FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24610 expressed protein FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24620 hypothetical protein FN1026-S Chr8 14781001 14887000 0 0 Deletion 106000 LOC_Os08g24630 protein kinase domain containing protein, expressed FN1026-S Chr8 16632332 16632358 0 0 Deletion 26 LOC_Os08g27240 ARID/BRIGHT DNA-binding domain containing protein, expressed FN1026-S Chr8 19563169 19563186 0 0 Deletion 17 FN1026-S Chr8 20378470 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr8 21718206 21718210 0 0 Deletion 4 FN1026-S Chr8 22757082 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1026-S Chr8 2636510 Chr2 8137782 0 Translocation 0 LOC_Os02g14730 ubiquitin carboxyl-terminal hydrolase family protein, expressed FN1026-S Chr8 2884665 2884665 0 0 Insertion 1 FN1026-S Chr9 11162605 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g18210 transposon protein, putative, CACTA, En/Spm sub-class FN1026-S Chr9 11298818 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1026-S Chr9 13805119 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN1026-S Chr9 14083782 Chr8 14660870 0 Translocation 0 LOC_Os08g24290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1026-S Chr9 14087193 Chr8 14886734 0 Translocation 0 LOC_Os08g24630 protein kinase domain containing protein, expressed FN1026-S Chr9 14087193 Chr8 14886734 0 Translocation 0 LOC_Os09g23690 UBX domain containing protein, expressed FN1026-S Chr9 19369327 19369328 0 0 Deletion 1 LOC_Os09g32450 DNA topoisomerase 3 protein, putative, expressed FN1026-S Chr9 9197671 9197671 0 0 Insertion 2