FN1040-S Chr1 10984387 10984388 0 0 Deletion 1 FN1040-S Chr1 19101352 19101352 0 0 Insertion 1 FN1040-S Chr1 21407601 21407613 0 0 Deletion 12 FN1040-S Chr1 22538523 A-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN1040-S Chr1 7929358 7929378 0 0 Deletion 20 FN1040-S Chr10 12403765 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr10 3168718 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr11 13397036 Chr2 2470221 0 Translocation 0 FN1040-S Chr11 16417978 16417983 0 0 Deletion 5 LOC_Os11g28510 expressed protein FN1040-S Chr11 16749525 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1040-S Chr11 22896133 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr11 23375925 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1040-S Chr11 23375926 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1040-S Chr12 13857693 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr12 20911174 20911177 0 0 Deletion 3 FN1040-S Chr12 2960887 3608859 0 0 Inversion 647972 LOC_Os12g06230 retrotransposon protein, putative, unclassified, expressed FN1040-S Chr12 3608862 3949667 0 0 Inversion 340805 LOC_Os12g07810 aldehyde dehydrogenase, putative, expressed FN1040-S Chr12 428638 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1040-S Chr12 7371153 7371159 0 0 Deletion 6 FN1040-S Chr2 12066353 12066360 0 0 Deletion 7 LOC_Os02g20460 Leucine Rich Repeat family protein, expressed FN1040-S Chr2 12244485 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1040-S Chr2 13816096 13816105 0 0 Deletion 9 FN1040-S Chr2 1995049 1995053 0 0 Deletion 4 FN1040-S Chr2 20911589 20911593 0 0 Deletion 4 FN1040-S Chr2 24274541 24274542 0 0 Deletion 1 FN1040-S Chr2 25143676 25143693 0 0 Deletion 17 FN1040-S Chr2 34071712 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN1040-S Chr2 34071713 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN1040-S Chr2 35376467 35376469 0 0 Deletion 2 FN1040-S Chr2 35615200 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1040-S Chr2 4396816 4396816 0 0 Insertion 2 FN1040-S Chr3 10144108 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr3 10694595 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr3 17563893 17563894 0 0 Deletion 1 LOC_Os03g30810 retrotransposon protein, putative, unclassified, expressed FN1040-S Chr3 29259478 29259492 0 0 Deletion 14 FN1040-S Chr3 29955617 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1040-S Chr3 32984607 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN1040-S Chr4 11446518 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr4 1386895 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g03250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1040-S Chr4 18064987 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr4 21072819 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr4 24707342 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g41670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1040-S Chr4 29991403 29991408 0 0 Deletion 5 FN1040-S Chr4 33991230 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr5 12698715 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr5 16171001 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr5 16462732 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr5 6703729 6703729 0 0 Insertion 2 FN1040-S Chr6 15539760 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr6 22843905 22843908 0 0 Deletion 3 FN1040-S Chr7 18886595 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1040-S Chr8 6367956 6838198 0 0 Inversion 470242 LOC_Os08g10810 retrotransposon, putative, centromere-specific, expressed FN1040-S Chr9 769193 769195 0 0 Deletion 2 FN1040-S Chr9 9379530 A-T 0 0 Single Base Substitution 0 INTERGENIC HET