FN1048-S Chr1 10356436 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr1 20863020 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr1 22631028 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr1 23808945 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr1 25399183 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr1 25399184 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr1 29820835 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g51870 methyltransferase, putative, expressed FN1048-S Chr1 30335001 30382000 0 0 Deletion 47000 LOC_Os01g52740 expressed protein FN1048-S Chr1 30335001 30382000 0 0 Deletion 47000 LOC_Os01g52750 OsSub3 - Putative Subtilisin homologue, expressed FN1048-S Chr1 30335001 30382000 0 0 Deletion 47000 LOC_Os01g52760 expressed protein FN1048-S Chr1 30335001 30382000 0 0 Deletion 47000 LOC_Os01g52770 GDSL-like lipase/acylhydrolase, putative, expressed FN1048-S Chr1 30335001 30382000 0 0 Deletion 47000 LOC_Os01g52780 HVA22, putative, expressed FN1048-S Chr1 30335001 30382000 0 0 Deletion 47000 LOC_Os01g52790 cytochrome P450 72A1, putative, expressed FN1048-S Chr1 30335001 30382000 0 0 Deletion 47000 LOC_Os01g52800 cytochrome P450 72A1, putative, expressed FN1048-S Chr1 30335001 30382000 0 0 Deletion 47000 LOC_Os01g52810 expressed protein FN1048-S Chr1 31275039 31275042 0 0 Deletion 3 FN1048-S Chr1 31635402 31635403 0 0 Deletion 1 FN1048-S Chr1 34707330 34707342 0 0 Deletion 12 LOC_Os01g60040 HEAT repeat family protein, putative, expressed FN1048-S Chr1 3976504 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g08190 transcriptional corepressor LEUNIG, putative, expressed FN1048-S Chr1 42473455 42473459 0 0 Deletion 4 FN1048-S Chr10 17838567 17838567 0 0 Insertion 4 FN1048-S Chr10 21424402 21424406 0 0 Deletion 4 LOC_Os10g39990 short-chain dehydrogenase/reductase SDR, putative, expressed FN1048-S Chr11 14580179 15341443 0 0 Inversion 761264 FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25600 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25610 ZOS11-02 - C2H2 zinc finger protein, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25620 glycine-rich RNA-binding protein 8, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25640 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25650 retrotransposon protein, putative, unclassified FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25660 retrotransposon protein, putative, Ty3-gypsy subclass FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25680 retrotransposon protein, putative, unclassified FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25690 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25700 tropinone reductase, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25720 cytokinin-N-glucosyltransferase 1, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25740 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25750 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25760 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25770 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25780 PB1 domain containing protein, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25810 retrotransposon protein, putative, Ty1-copia subclass FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25820 retrotransposon protein, putative, unclassified FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25830 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25840 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25850 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25860 protein Kinase, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25870 hypothetical protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25874 hypothetical protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25880 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25890 hypothetical protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25900 hAT dimerisation domain containing protein, putative FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25910 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25920 transcription factor-related, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25930 retrotransposon protein, putative, unclassified FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25940 retrotransposon protein, putative, unclassified FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25950 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25970 hypothetical protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25980 phospholipid-transporting ATPase 2, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g25990 indole-3-acetate beta-glucosyltransferase, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26000 retrotransposon, putative, centromere-specific, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26010 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26020 hypothetical protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26030 GTPase of unknown function domain containing protein, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26040 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26060 retrotransposon protein, putative, Ty3-gypsy subclass FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26070 transposon protein, putative, CACTA, En/Spm sub-class FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26100 transposon protein, putative, CACTA, En/Spm sub-class FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26110 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26130 receptor protein kinase TMK1 precursor, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26140 cysteine-rich receptor-like protein kinase 4 precursor, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26150 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26160 RNA polymerase sigma factor, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26170 retrotransposon protein, putative, Ty3-gypsy subclass FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26190 RALFL23 - Rapid ALkalinization Factor RALF family protein precursor, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26200 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26210 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26240 transposon protein, putative, CACTA, En/Spm sub-class FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26270 retrotransposon protein, putative, unclassified FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26280 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26290 retrotransposon, putative, centromere-specific, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26300 transposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26330 retrotransposon protein, putative, Ty3-gypsy subclass FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26340 RALFL24 - Rapid ALkalinization Factor RALF family protein precursor, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26350 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26390 sulfotransferase domain containing protein, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26400 retrotransposon, putative, centromere-specific, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26410 retrotransposon, putative, centromere-specific, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26420 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26430 retrotransposon, putative, centromere-specific, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26440 retrotransposon, putative, centromere-specific, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26450 retrotransposon, putative, centromere-specific FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26460 retrotransposon protein, putative, Ty3-gypsy subclass FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26470 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26480 retrotransposon, putative, centromere-specific FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26490 retrotransposon protein, putative, Ty3-gypsy subclass FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26530 retrotransposon protein, putative, Ty3-gypsy subclass FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26560 expressed protein FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26570 dehydrin, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26580 MEGL18 - Maternally expressed gene MEG family protein precursor, putative, expressed FN1048-S Chr11 14595001 15235000 0 0 Deletion 640000 LOC_Os11g26590 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 15235102 15341477 0 0 Inversion 106375 FN1048-S Chr11 16627096 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr11 17165681 17165681 0 0 Insertion 1 FN1048-S Chr11 17535697 17535710 0 0 Deletion 13 FN1048-S Chr11 19839718 Chr4 2841993 0 Translocation 0 LOC_Os11g33942 plant protein of unknown function domain containing protein, expressed FN1048-S Chr11 25421562 25421594 0 0 Deletion 32 FN1048-S Chr11 26593779 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g44014 retrotransposon protein, putative, unclassified, expressed FN1048-S Chr11 7903490 9827468 0 0 Inversion 1923978 FN1048-S Chr11 8875221 10935775 0 0 Inversion 2060554 LOC_Os11g19160 beta-D-xylosidase, putative, expressed FN1048-S Chr11 9823939 9828521 0 0 Inversion 4582 FN1048-S Chr12 10802794 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr12 27164289 27164294 0 0 Deletion 5 FN1048-S Chr12 2789164 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr12 658166 658170 0 0 Deletion 4 LOC_Os12g02150 expressed protein FN1048-S Chr2 10863732 10863733 0 0 Deletion 1 FN1048-S Chr2 22243344 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr2 22899544 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr2 30361514 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1048-S Chr2 5527166 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN1048-S Chr2 7931565 7931570 0 0 Deletion 5 FN1048-S Chr3 17820005 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr3 20158363 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g36350 retrotransposon protein, putative, Ty3-gypsy subclass FN1048-S Chr3 24447501 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr3 33055081 A-T 0 0 Single Base Substitution 0 INTRON HET FN1048-S Chr3 33117326 33117357 0 0 Deletion 31 FN1048-S Chr3 35100928 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g61920 electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed FN1048-S Chr3 6307689 6307690 0 0 Deletion 1 FN1048-S Chr4 12415569 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1048-S Chr4 20326665 20326665 0 0 Insertion 1 FN1048-S Chr4 26393897 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr4 30070454 30070463 0 0 Deletion 9 FN1048-S Chr4 32833417 32833418 0 0 Deletion 1 FN1048-S Chr4 33570561 33570562 0 0 Deletion 1 FN1048-S Chr4 33801963 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr4 34739460 34739462 0 0 Deletion 2 FN1048-S Chr5 11980262 11980270 0 0 Deletion 8 FN1048-S Chr5 2473184 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g05090 transposon protein, putative, unclassified, expressed FN1048-S Chr5 27566594 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr5 484056 484077 0 0 Deletion 21 FN1048-S Chr5 5016518 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g09040 transposon protein, putative, unclassified, expressed FN1048-S Chr5 6516207 6585935 0 0 Inversion 69728 LOC_Os05g11510 B-box zinc finger family protein, putative, expressed FN1048-S Chr5 6524232 6585941 0 0 Inversion 61709 FN1048-S Chr5 8549394 8549395 0 0 Deletion 1 FN1048-S Chr6 10003129 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr6 12428579 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr6 12441788 12444151 0 0 Deletion 2363 LOC_Os06g21570 Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed FN1048-S Chr6 12441794 Chr3 4348338 0 Translocation 0 LOC_Os06g21570 Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed FN1048-S Chr6 12444143 Chr3 4348298 0 Translocation 0 FN1048-S Chr6 13885991 13886001 0 0 Deletion 10 LOC_Os06g23770 expressed protein FN1048-S Chr6 13946684 13946719 0 0 Deletion 35 FN1048-S Chr6 14927524 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr6 15066808 A-G 0 0 Single Base Substitution 0 INTRON HET FN1048-S Chr6 15745350 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr6 20974975 20974976 0 0 Deletion 1 FN1048-S Chr6 22277845 22277852 0 0 Deletion 7 FN1048-S Chr6 25148430 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr6 25390116 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g42280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1048-S Chr6 28133805 28133805 0 0 Insertion 2 LOC_Os06g46366 zinc finger, C3HC4 type, domain containing protein, expressed FN1048-S Chr6 7128848 7128861 0 0 Deletion 13 FN1048-S Chr7 10404960 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr7 1065828 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr7 21755066 21755072 0 0 Deletion 6 LOC_Os07g36390 PPR repeat containing protein, expressed FN1048-S Chr7 27294492 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr7 3326238 C-G 0 0 Single Base Substitution 0 INTRON HET FN1048-S Chr7 6720252 6720258 0 0 Deletion 6 LOC_Os07g12030 hypothetical protein FN1048-S Chr7 7898368 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1048-S Chr7 9598076 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g16400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1048-S Chr8 12712852 T-C 0 0 Single Base Substitution 0 INTRON HET FN1048-S Chr8 19998614 19998614 0 0 Insertion 1 FN1048-S Chr8 20923220 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1048-S Chr8 7644392 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN1048-S Chr9 12081052 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN1048-S Chr9 7877999 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1048-S Chr9 9574205 Chr1 6539783 0 Translocation 0