FN1080-S Chr1 12194057 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr1 12682472 12682472 0 0 Insertion 1 FN1080-S Chr1 16962520 T-G 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN1080-S Chr1 22904478 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr1 23223832 23223833 0 0 Deletion 1 FN1080-S Chr1 5587510 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr10 10335433 10335433 0 0 Insertion 1 FN1080-S Chr10 12057585 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g23110 retrotransposon protein, putative, unclassified, expressed FN1080-S Chr11 11053115 11053116 0 0 Deletion 1 FN1080-S Chr11 13169703 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1080-S Chr11 21328438 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr11 28242167 28242170 0 0 Deletion 3 LOC_Os11g46990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1080-S Chr12 10828612 10828615 0 0 Deletion 3 FN1080-S Chr12 2066555 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr12 22492494 22492521 0 0 Deletion 27 FN1080-S Chr12 3824476 A-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1080-S Chr12 8840820 Chr7 19482301 0 Translocation 0 FN1080-S Chr2 20541601 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr2 23366033 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1080-S Chr2 23658613 A-T 0 0 Single Base Substitution 0 INTRON HET FN1080-S Chr2 25215812 G-A 0 0 Single Base Substitution 0 INTRON HET FN1080-S Chr2 394364 394368 0 0 Deletion 4 LOC_Os02g01710 peptidase family C78 domain containing protein, expressed FN1080-S Chr2 6142240 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr2 8906321 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr3 1009729 T-C 0 0 Single Base Substitution 0 INTRON HET FN1080-S Chr3 1009749 A-T 0 0 Single Base Substitution 0 INTRON HET FN1080-S Chr3 10261920 T-A 0 0 Single Base Substitution 0 INTRON HET FN1080-S Chr3 12810397 12810404 0 0 Deletion 7 FN1080-S Chr3 21382866 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr3 21568470 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr3 24374368 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g43610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1080-S Chr3 28923535 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr3 35760288 35760327 0 0 Deletion 39 FN1080-S Chr3 6789116 6789125 0 0 Deletion 9 FN1080-S Chr3 7707175 7707175 0 0 Insertion 9 LOC_Os03g14205 expressed protein FN1080-S Chr4 10061202 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr4 11426929 11426941 0 0 Deletion 12 FN1080-S Chr4 11505525 11505538 0 0 Deletion 13 FN1080-S Chr4 1511023 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g03490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1080-S Chr4 28766209 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr4 33069023 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1080-S Chr4 8757671 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr5 11352027 G-A 0 0 Single Base Substitution 0 INTRON HET FN1080-S Chr5 14034814 14141044 0 0 Inversion 106230 LOC_Os05g24500 terpene synthase, N-terminal domain containing protein, expressed FN1080-S Chr5 18000375 18265182 0 0 Inversion 264807 LOC_Os05g30980 RNA recognition motif containing protein, putative, expressed FN1080-S Chr5 18000375 18265182 0 0 Inversion 264807 LOC_Os05g31410 retrotransposon protein, putative, unclassified, expressed FN1080-S Chr5 18000401 18265692 0 0 Inversion 265291 LOC_Os05g30980 RNA recognition motif containing protein, putative, expressed FN1080-S Chr5 18265387 18752043 0 0 Inversion 486656 LOC_Os05g31410 retrotransposon protein, putative, unclassified, expressed FN1080-S Chr5 18265684 18752043 0 0 Inversion 486359 FN1080-S Chr5 2131594 2131596 0 0 Deletion 2 FN1080-S Chr5 25643240 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g44100 trehalose synthase, putative, expressed FN1080-S Chr5 26352463 26359062 0 0 Inversion 6599 FN1080-S Chr5 29077691 29077701 0 0 Deletion 10 FN1080-S Chr5 638062 638133 0 0 Deletion 71 FN1080-S Chr6 14163617 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr6 17385584 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr6 26584308 26584309 0 0 Deletion 1 FN1080-S Chr6 27451654 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1080-S Chr6 27451655 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1080-S Chr7 13776145 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1080-S Chr7 19544575 21155691 0 0 Inversion 1611116 LOC_Os07g32730 DNA repair protein rhp16, putative, expressed FN1080-S Chr7 19544575 21155691 0 0 Inversion 1611116 LOC_Os07g35370 TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed FN1080-S Chr7 19551818 21155704 0 0 Inversion 1603886 LOC_Os07g35370 TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed FN1080-S Chr7 19603742 19603744 0 0 Deletion 2 FN1080-S Chr7 19603789 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN1080-S Chr7 25951068 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr7 26879848 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr7 27877529 27877529 0 0 Insertion 1 FN1080-S Chr7 5223040 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN1080-S Chr8 12103181 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1080-S Chr8 22265044 22265044 0 0 Insertion 1 FN1080-S Chr8 4123060 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g07360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1080-S Chr9 10760409 10760409 0 0 Insertion 6 FN1080-S Chr9 1826990 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g03640 expressed protein FN1080-S Chr9 22331835 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g38890 expressed protein FN1080-S Chr9 8755134 Chr5 25363240 0 Translocation 0 FN1080-S Chr9 8755148 8852729 0 0 Inversion 97581 FN1080-S Chr9 8852715 Chr5 25364224 0 Translocation 0