FN1116-S Chr1 2665738 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN1116-S Chr1 33867785 33867792 0 0 Deletion 7 FN1116-S Chr1 40567361 40567365 0 0 Deletion 4 LOC_Os01g70100 zinc finger DHHC domain-containing protein, putative, expressed FN1116-S Chr1 43226685 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1116-S Chr1 4876587 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr10 19269345 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1116-S Chr10 21239312 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr10 4399647 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr10 7666346 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g14120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1116-S Chr10 9225801 9225807 0 0 Deletion 6 FN1116-S Chr11 10313341 Chr9 18370252 0 Translocation 0 FN1116-S Chr11 10313531 Chr9 18370321 0 Translocation 0 LOC_Os11g18300 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18300 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18310 cycloartenol synthase, putative FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18320 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18340 cycloartenol synthase, putative, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18366 cycloartenol synthase, putative, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18382 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18400 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18420 retrotransposon protein, putative, Ty3-gypsy subclass FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18430 retrotransposon protein, putative, Ty3-gypsy subclass FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18440 retrotransposon protein, putative, Ty3-gypsy subclass FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18470 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18480 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18490 retrotransposon, putative, centromere-specific FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18500 hypothetical protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18520 transposon protein, putative, CACTA, En/Spm sub-class FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18530 hypothetical protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18540 transposon protein, putative, CACTA, En/Spm sub-class FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18550 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18570 cytochrome P450, putative, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18580 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18590 retrotransposon protein, putative, Ty3-gypsy subclass FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18610 transposon protein, putative, unclassified FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18630 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18660 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18670 ubiquitin family protein, putative, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18680 hypothetical protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18690 glycosyl hydrolase family 3 protein, putative, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18700 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18710 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18720 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18730 glycosyl hydrolase family 3 protein, putative, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18740 hypothetical protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18750 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18760 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18770 PHD-finger family protein, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18780 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18790 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18800 retrotransposon protein, putative, unclassified FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18830 survival motor neuron containing protein, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18850 retrotransposon protein, putative, unclassified FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18860 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18870 osFTL11 FT-Like11 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18880 UBX domain-containing protein, putative, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18890 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18900 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18910 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18919 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18930 hypothetical protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18940 WW domain containing protein, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18947 zinc finger, C3HC4 type domain containing protein, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18954 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18961 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18970 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18980 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g18990 histidine triad family protein, putative, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g19000 transposon protein, putative, CACTA, En/Spm sub-class FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g19010 transposon protein, putative, CACTA, En/Spm sub-class FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g19020 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g19030 FAR1 family protein, expressed FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g19040 hypothetical protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g19050 expressed protein FN1116-S Chr11 10314001 10871000 0 0 Deletion 557000 LOC_Os11g19060 BABY BOOM 1, putative, expressed FN1116-S Chr11 10974473 A-G 0 0 Single Base Substitution 0 INTRON HET FN1116-S Chr11 18345098 18345106 0 0 Deletion 8 FN1116-S Chr11 22164668 A-G 0 0 Single Base Substitution 0 INTRON HET FN1116-S Chr11 26941555 26941558 0 0 Deletion 3 LOC_Os11g44560 protein kinase domain containing protein, expressed FN1116-S Chr11 28875452 28875454 0 0 Deletion 2 FN1116-S Chr11 6927468 Chr7 19968670 0 Translocation 0 LOC_Os11g12410 serpin domain containing protein, putative, expressed FN1116-S Chr12 2899330 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g06150 DUF623 domain containing protein, expressed FN1116-S Chr12 3347016 12253330 0 0 Inversion 8906314 LOC_Os12g06890 OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed FN1116-S Chr12 3347016 12253330 0 0 Inversion 8906314 LOC_Os12g21780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr12 3347032 12251360 0 0 Inversion 8904328 LOC_Os12g06890 OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed FN1116-S Chr12 3347032 12251360 0 0 Inversion 8904328 LOC_Os12g21780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr12 842859 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr2 10236211 10236211 0 0 Insertion 4 FN1116-S Chr2 12361693 C-T 0 0 Single Base Substitution 0 INTRON HET FN1116-S Chr2 22631289 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr2 24888028 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr2 26133126 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1116-S Chr2 29477748 29477750 0 0 Deletion 2 FN1116-S Chr3 11637175 11637176 0 0 Deletion 1 FN1116-S Chr3 12061398 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr3 12596749 12596771 0 0 Deletion 22 FN1116-S Chr3 17159076 17159092 0 0 Deletion 16 FN1116-S Chr3 18792257 19356000 0 0 Inversion 563743 LOC_Os03g32850 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr3 23379597 23379613 0 0 Deletion 16 FN1116-S Chr3 24236700 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr3 28175439 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr3 28919620 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr3 31090426 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr3 33010649 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr3 33945299 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g59620 phospholipase, patatin family, putative, expressed FN1116-S Chr3 5979680 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN1116-S Chr3 5979681 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN1116-S Chr3 7233881 7233883 0 0 Deletion 2 FN1116-S Chr4 10990039 G-T 0 0 Single Base Substitution 0 INTRON HET FN1116-S Chr4 10995900 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr4 19636949 19636951 0 0 Deletion 2 FN1116-S Chr4 19966157 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr4 29288240 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr4 33076538 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr4 35397486 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr4 8199829 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g14620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr4 8207170 Chr1 9301909 0 Translocation 0 LOC_Os04g14640 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr4 8208247 Chr1 9295846 0 Translocation 0 LOC_Os01g16370 NBS-LRR type disease resistance protein, putative, expressed FN1116-S Chr4 8622509 T-C 0 0 Single Base Substitution 0 INTRON HET FN1116-S Chr5 11841265 11841266 0 0 Deletion 1 FN1116-S Chr5 21541024 21541044 0 0 Deletion 20 LOC_Os05g36400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1116-S Chr5 21733186 21733186 0 0 Insertion 1 FN1116-S Chr5 22411249 A-T 0 0 Single Base Substitution 0 INTRON HET FN1116-S Chr6 10369851 10369851 0 0 Insertion 2 FN1116-S Chr6 28503138 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1116-S Chr7 19580061 19580061 0 0 Insertion 2 FN1116-S Chr7 23547471 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr7 24144354 24144355 0 0 Deletion 1 FN1116-S Chr7 6543809 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1116-S Chr7 8893096 8893097 0 0 Deletion 1 FN1116-S Chr8 16212030 16212030 0 0 Insertion 2 FN1116-S Chr8 3653379 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr8 7301308 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1116-S Chr8 9913868 9913895 0 0 Deletion 27 LOC_Os08g16250 transposon protein, putative, CACTA, En/Spm sub-class FN1116-S Chr9 19172296 19172529 0 0 Deletion 233 FN1116-S Chr9 19172304 Chr5 1977463 0 Translocation 0 LOC_Os05g04340 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN1116-S Chr9 19172525 Chr5 1977461 0 Translocation 0 LOC_Os05g04340 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN1116-S Chr9 19655857 19655857 0 0 Insertion 2 FN1116-S Chr9 20004441 Chr4 8207155 0 Translocation 0 LOC_Os04g14640 retrotransposon protein, putative, unclassified, expressed FN1116-S Chr9 20004441 Chr4 8207155 0 Translocation 0 LOC_Os09g33876 expressed protein FN1116-S Chr9 3985678 3985681 0 0 Deletion 3 FN1116-S Chr9 4188248 A-G 0 0 Single Base Substitution 0 INTERGENIC HET