FN1204-S Chr1 13953937 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1204-S Chr1 17514987 17514991 0 0 Deletion 4 FN1204-S Chr1 21438040 21438058 0 0 Deletion 18 FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38244 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38270 retrotransposon protein, putative, Ty3-gypsy subclass FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38280 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38290 retrotransposon protein, putative, unclassified FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38300 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38310 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38320 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38340 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38359 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38380 plant protein of unknown function domain containing protein, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38390 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38430 plant protein of unknown function domain containing protein, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38440 transposon protein, putative, unclassified, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38450 hypothetical protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38460 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38480 GA18326-PA, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38490 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38500 DUF538 domain containing protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38510 protein transport protein Sec61 subunit beta, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38520 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38530 ELF3 protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38540 transposon protein, putative, unclassified, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38550 transposon protein, putative, unclassified, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38560 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38570 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38580 beta,beta-carotene 9,10-dioxygenase, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38590 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38600 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38610 helix-loop-helix DNA-binding domain containing protein, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38620 3-5 exonuclease/ nucleic acid binding protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38640 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38650 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38660 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38670 transporter family protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38680 transporter family protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38690 nucleic acid binding protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38700 nucleic acid binding protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38710 nucleic acid binding protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38720 nucleic acid binding protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38750 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38760 nucleic acid binding protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38780 nucleic acid binding protein, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38790 transposon protein, putative, CACTA, En/Spm sub-class FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38800 retrotransposon protein, putative, unclassified FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38840 TKL_IRAK_DUF26-le.1 - DUF26 kinases have homology to DUF26 containing loci, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38850 receptor-like serine-threonine protein kinase, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38860 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38870 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38880 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38890 expressed protein FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38900 TKL_IRAK_DUF26-le.2 - DUF26 kinases have homology to DUF26 containing loci, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38910 cysteine-rich receptor-like protein kinase 10 precursor, putative, expressed FN1204-S Chr1 21446001 21864000 0 0 Deletion 418000 LOC_Os01g38920 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr1 3179198 3179198 0 0 Insertion 1 LOC_Os01g06720 disease resistance protein SlVe2 precursor, putative, expressed FN1204-S Chr1 3341686 3341686 0 0 Insertion 2 FN1204-S Chr1 40087581 40087583 0 0 Deletion 2 FN1204-S Chr10 16319625 16319628 0 0 Deletion 3 FN1204-S Chr11 13086926 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr11 13137422 C-A 0 0 Single Base Substitution 0 INTRON HET FN1204-S Chr11 13726286 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr11 16139945 16139948 0 0 Deletion 3 FN1204-S Chr11 17139796 C-A 0 0 Single Base Substitution 0 INTRON HET FN1204-S Chr11 23208034 23208034 0 0 Insertion 3 FN1204-S Chr11 3337290 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN1204-S Chr11 4110192 4110193 0 0 Deletion 1 LOC_Os11g07940 expressed protein FN1204-S Chr11 8766256 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr12 11684171 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr12 22178737 22178738 0 0 Deletion 1 FN1204-S Chr12 26887886 26887901 0 0 Deletion 15 FN1204-S Chr12 3986361 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN1204-S Chr12 4746038 Chr9 13582993 0 Translocation 0 FN1204-S Chr12 9585983 9585983 0 0 Insertion 2 FN1204-S Chr2 11635362 11635376 0 0 Deletion 14 FN1204-S Chr2 12995011 12998822 0 0 Deletion 3811 LOC_Os02g21850 hypothetical protein FN1204-S Chr2 21073373 21073375 0 0 Deletion 2 FN1204-S Chr2 28013466 28013477 0 0 Deletion 11 LOC_Os02g45974 expressed protein FN1204-S Chr2 31969685 31969692 0 0 Deletion 7 LOC_Os02g52210 zinc finger, C3HC4 type domain containing protein, expressed FN1204-S Chr2 3997041 3997060 0 0 Deletion 19 FN1204-S Chr2 4756866 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr3 18764499 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1204-S Chr3 25285566 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g44830 OsRhmbd9 - Putative Rhomboid homologue, expressed FN1204-S Chr3 26265224 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g46440 BTBA4 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed FN1204-S Chr3 2834823 A-G 0 0 Single Base Substitution 0 INTRON HET FN1204-S Chr3 5768499 6015961 0 0 Inversion 247462 LOC_Os03g11590 integral membrane protein, putative, expressed FN1204-S Chr3 5769812 6015964 0 0 Inversion 246152 LOC_Os03g11590 integral membrane protein, putative, expressed FN1204-S Chr3 9056727 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr3 9957297 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1204-S Chr4 20326665 20326665 0 0 Insertion 1 FN1204-S Chr5 1078217 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1204-S Chr5 13087256 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1204-S Chr5 20042349 20042350 0 0 Deletion 1 FN1204-S Chr5 21993422 21993427 0 0 Deletion 5 LOC_Os05g37590 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr5 24763259 24763268 0 0 Deletion 9 FN1204-S Chr5 4389140 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g08060 expressed protein FN1204-S Chr5 6064935 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1204-S Chr5 6777149 6777160 0 0 Deletion 11 FN1204-S Chr5 7136637 7136641 0 0 Deletion 4 FN1204-S Chr6 15066808 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN1204-S Chr6 17549183 17549184 0 0 Deletion 1 FN1204-S Chr6 20784401 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1204-S Chr6 27995526 27995541 0 0 Deletion 15 FN1204-S Chr6 3171910 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1204-S Chr7 1065828 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr7 11121914 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN1204-S Chr7 22155003 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g25950 transposon protein, putative, unclassified, expressed FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g25960 transposon protein, putative, unclassified, expressed FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g25970 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g25980 retrotransposon protein, putative, unclassified, expressed FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g25990 alcohol oxidase-related, putative, expressed FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g26010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g26020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g26030 expressed protein FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g26040 expressed protein FN1204-S Chr8 15785001 15848000 0 0 Deletion 63000 LOC_Os08g26050 hypothetical protein FN1204-S Chr8 3282500 T-G 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g06010 transporter, major facilitator family, putative, expressed FN1204-S Chr8 9661111 Chr5 4928417 0 Translocation 0 FN1204-S Chr9 1087288 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1204-S Chr9 11975411 11975413 0 0 Deletion 2 FN1204-S Chr9 12081052 T-C 0 0 Single Base Substitution 0 INTRON HET FN1204-S Chr9 15819126 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1204-S Chr9 9989662 9989671 0 0 Deletion 9