FN1243-S Chr1 16430260 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1243-S Chr1 17342919 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN1243-S Chr1 21886022 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1243-S Chr1 24687641 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr1 24986905 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1243-S Chr1 25516061 25516063 0 0 Deletion 2 FN1243-S Chr1 28962461 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr1 31643041 31643049 0 0 Deletion 8 LOC_Os01g55040 1,3-beta-glucan synthase component, putative, expressed FN1243-S Chr1 8042190 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr10 3236650 3236651 0 0 Deletion 1 FN1243-S Chr11 11048165 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN1243-S Chr11 14932308 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1243-S Chr11 18689233 Chr1 21797290 0 Translocation 0 FN1243-S Chr11 22527025 22527025 0 0 Insertion 3 FN1243-S Chr11 23757950 23757951 0 0 Deletion 1 FN1243-S Chr11 829207 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g02620 BTBN21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed FN1243-S Chr11 9746461 9746462 0 0 Deletion 1 FN1243-S Chr11 9799947 T-C 0 0 Single Base Substitution 0 INTRON HET FN1243-S Chr12 11750363 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr12 12595498 12595502 0 0 Deletion 4 FN1243-S Chr12 13639739 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr12 14170054 14170055 0 0 Deletion 1 LOC_Os12g24710 retrotransposon protein, putative, unclassified, expressed FN1243-S Chr12 15572998 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr12 16273716 C-A 0 0 Single Base Substitution 0 INTRON HET FN1243-S Chr12 2837270 2837272 0 0 Deletion 2 FN1243-S Chr12 7141888 Chr11 13985390 0 Translocation 0 FN1243-S Chr2 14790173 14790177 0 0 Deletion 4 FN1243-S Chr2 18110999 G-C 0 0 Single Base Substitution 0 INTRON HET FN1243-S Chr2 20646403 20646407 0 0 Deletion 4 FN1243-S Chr2 23148114 23148117 0 0 Deletion 3 LOC_Os02g38280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1243-S Chr2 2630608 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr2 30290909 30290909 0 0 Insertion 3 LOC_Os02g49555 expressed protein FN1243-S Chr2 32101693 32101717 0 0 Deletion 24 FN1243-S Chr2 35185460 35185465 0 0 Deletion 5 FN1243-S Chr2 4766307 T-C 0 0 Single Base Substitution 0 INTRON HET FN1243-S Chr2 9838672 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1243-S Chr3 18699629 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1243-S Chr3 20784967 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr3 28811434 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr3 28984926 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr3 35293412 35293421 0 0 Deletion 9 FN1243-S Chr3 43930 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1243-S Chr4 14547660 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1243-S Chr4 26564849 26564860 0 0 Deletion 11 FN1243-S Chr4 30296832 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN1243-S Chr5 12098129 C-G 0 0 Single Base Substitution 0 INTRON HET FN1243-S Chr5 14502142 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g25060 PPR repeat domain containing protein, putative, expressed FN1243-S Chr5 22321564 22321565 0 0 Deletion 1 FN1243-S Chr5 3579783 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1243-S Chr5 8153396 8153409 0 0 Deletion 13 FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16280 transposon protein, putative, unclassified, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16290 transposon protein, putative, unclassified, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16300 expressed protein FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16315 translation initiation factor IF-2, putative, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16320 expressed protein FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16340 transposon protein, putative, CACTA, En/Spm sub-class FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16360 expressed protein FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16370 retrotransposon protein, putative, unclassified, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16380 retrotransposon protein, putative, unclassified, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16395 expressed protein FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16410 retrotransposon, putative, centromere-specific, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16420 SHR5-receptor-like kinase, putative, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16430 SHR5-receptor-like kinase, putative, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16440 expressed protein FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16450 hypothetical protein FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16460 expressed protein FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16470 retrotransposon protein, putative, unclassified, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16480 retrotransposon protein, putative, unclassified, expressed FN1243-S Chr5 9214001 9358000 0 0 Deletion 144000 LOC_Os05g16490 expressed protein FN1243-S Chr6 10191356 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr6 10191357 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr6 20519318 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1243-S Chr6 23627902 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1243-S Chr6 24352439 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN1243-S Chr7 15242047 15242055 0 0 Deletion 8 FN1243-S Chr8 13594604 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr8 13611706 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g22620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1243-S Chr8 27625588 27625590 0 0 Deletion 2 FN1243-S Chr8 8218128 8218128 0 0 Insertion 6 FN1243-S Chr9 12843594 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1243-S Chr9 17889225 17889225 0 0 Insertion 2 FN1243-S Chr9 18916001 18954000 0 0 Deletion 38000 LOC_Os09g31434 expressed protein FN1243-S Chr9 18916001 18954000 0 0 Deletion 38000 LOC_Os09g31438 OsSPL17 - SBP-box gene family member, expressed FN1243-S Chr9 18916001 18954000 0 0 Deletion 38000 LOC_Os09g31442 expressed protein FN1243-S Chr9 18916001 18954000 0 0 Deletion 38000 LOC_Os09g31446 expressed protein FN1243-S Chr9 18916001 18954000 0 0 Deletion 38000 LOC_Os09g31450 polygalacturonase inhibitor 1 precursor, putative, expressed FN1243-S Chr9 18916001 18954000 0 0 Deletion 38000 LOC_Os09g31454 MYB family transcription factor, putative, expressed FN1243-S Chr9 18916458 Chr3 31512355 0 Translocation 0 LOC_Os03g55389 casein kinase II subunit alpha-1, putative, expressed