FN1249-S Chr1 1741892 1741895 0 0 Deletion 3 FN1249-S Chr1 22796569 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1249-S Chr1 23406001 23406002 0 0 Deletion 1 FN1249-S Chr1 34963766 34963780 0 0 Deletion 14 FN1249-S Chr10 11844930 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr11 16097507 C-T 0 0 Single Base Substitution 0 INTRON HET FN1249-S Chr11 20080649 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr11 27210721 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr11 2927870 2927884 0 0 Deletion 14 FN1249-S Chr11 4544194 T-C 0 0 Single Base Substitution 0 INTRON HET FN1249-S Chr11 4660064 4660065 0 0 Deletion 1 FN1249-S Chr12 21942499 21942504 0 0 Deletion 5 FN1249-S Chr12 5119846 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1249-S Chr12 5350614 5350615 0 0 Deletion 1 FN1249-S Chr12 7563072 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1249-S Chr2 28184844 28184849 0 0 Deletion 5 FN1249-S Chr2 30369652 30369657 0 0 Deletion 5 FN1249-S Chr2 5504585 7108413 0 0 Inversion 1603828 FN1249-S Chr3 22047798 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr3 26870665 T-G 0 0 Single Base Substitution 0 INTRON HET FN1249-S Chr4 11370510 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g20320 retrotransposon protein, putative, unclassified, expressed FN1249-S Chr4 11370513 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g20320 retrotransposon protein, putative, unclassified, expressed FN1249-S Chr4 11372367 11372371 0 0 Deletion 4 FN1249-S Chr4 1617378 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr4 19723564 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52860 TKL_IRAK_CrRLK1L-1.9 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52870 OsFBW1 - F-box domain and WD40 repeat containing protein, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52880 expressed protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52890 ATBAG1, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52900 ABC transporter family protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52910 hypothetical protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52920 remorin family protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52930 hypothetical protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52940 SIT4 phosphatase-associated protein domain containing protein, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52950 nitrate-induced NOI protein, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52960 nucleolin, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52970 NBS-LRR disease resistance protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52980 expressed protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g52990 expressed protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53000 NBS-LRR disease resistance protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53010 transposon protein, putative, unclassified, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53020 GRF zinc finger family protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53030 NBS-LRR disease resistance protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53040 retrotransposon protein, putative, unclassified, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53050 disease resistance RPP13-like protein 1, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53060 NBS-LRR disease resistance protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53070 expressed protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53080 hypothetical protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53110 hypothetical protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53120 NB-ARC domain containing protein, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53130 bromodomain containing protein, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53140 expressed protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53150 peptidase aspartic family protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53160 NBS-LRR disease resistance protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53170 bromodomain containing protein, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53180 expressed protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53190 CPuORF12 - conserved peptide uORF-containing transcript, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53195 expressed protein FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53200 exonuclease, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53210 hydroxyacid oxidase 1, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53214 hydroxyacid oxidase 1, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53220 signal recognition particle 14 kDa protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53230 aminomethyltransferase, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53240 autophagy-related protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53250 polyphenol oxidase protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53260 polyphenol oxidase, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53270 retrotransposon protein, putative, Ty3-gypsy subclass FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53290 polyphenol oxidase protein, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53300 polyphenol oxidase, putative, expressed FN1249-S Chr4 31479001 31761000 0 0 Deletion 282000 LOC_Os04g53310 soluble starch synthase 3, chloroplast precursor, putative, expressed FN1249-S Chr4 31479125 31806235 0 0 Inversion 327110 LOC_Os04g52860 TKL_IRAK_CrRLK1L-1.9 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN1249-S Chr4 31761089 31806243 0 0 Inversion 45154 FN1249-S Chr4 4734132 4734135 0 0 Deletion 3 FN1249-S Chr4 8310653 8310654 0 0 Deletion 1 FN1249-S Chr5 10785465 10785466 0 0 Deletion 1 FN1249-S Chr5 11728068 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr5 28666735 28666736 0 0 Deletion 1 LOC_Os05g49980 OsFBL26 - F-box domain and LRR containing protein, expressed FN1249-S Chr5 9933907 9933920 0 0 Deletion 13 LOC_Os05g17330 retrotransposon protein, putative, Ty3-gypsy subclass FN1249-S Chr6 23287298 23317441 0 0 Deletion 30143 LOC_Os06g39230 aldehyde dehydrogenase, putative, expressed FN1249-S Chr6 23287298 23317441 0 0 Deletion 30143 LOC_Os06g39240 endothelial differentiation-related factor 1, putative, expressed FN1249-S Chr6 23287298 23317441 0 0 Deletion 30143 LOC_Os06g39250 transposon protein, putative, unclassified, expressed FN1249-S Chr6 23287298 23317441 0 0 Deletion 30143 LOC_Os06g39260 solute carrier family 35 member B1, putative, expressed FN1249-S Chr6 23287298 23317441 0 0 Deletion 30143 LOC_Os06g39270 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN1249-S Chr6 23287298 23317441 0 0 Deletion 30143 LOC_Os06g39280 retrotransposon protein, putative, unclassified, expressed FN1249-S Chr6 23287298 23317441 0 0 Deletion 30143 LOC_Os06g39290 expressed protein FN1249-S Chr6 23287315 Chr3 19926867 0 Translocation 0 FN1249-S Chr6 23317437 Chr3 19926864 0 Translocation 0 FN1249-S Chr6 25116921 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr6 25116923 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1249-S Chr6 2710095 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1249-S Chr6 27378518 27378524 0 0 Deletion 6 FN1249-S Chr6 308125 308129 0 0 Deletion 4 LOC_Os06g01500 IQ calmodulin-binding motif family protein, putative, expressed FN1249-S Chr6 5180411 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16390 SET domain containing protein, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16400 helix-loop-helix DNA-binding domain containing protein, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16410 armadillo/beta-catenin repeat family protein, putative, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16420 amino acid transporter, putative, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16430 FHA domain containing protein, putative, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16440 expressed protein FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16450 Leucine Rich Repeat family protein, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16460 expressed protein FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16470 retrotransposon protein, putative, unclassified FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16480 expressed protein FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16500 expressed protein FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16510 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16550 hypothetical protein FN1249-S Chr6 9354001 9513000 0 0 Deletion 159000 LOC_Os06g16560 expressed protein FN1249-S Chr7 25805765 25805777 0 0 Deletion 12 FN1249-S Chr7 26318632 26318639 0 0 Deletion 7 FN1249-S Chr7 59483 59493 0 0 Deletion 10 LOC_Os07g01110 laccase precursor protein, putative, expressed FN1249-S Chr8 25907287 25907288 0 0 Deletion 1 FN1249-S Chr8 26831456 26831458 0 0 Deletion 2 FN1249-S Chr8 4591952 4591952 0 0 Insertion 1 FN1249-S Chr9 15791054 15791068 0 0 Deletion 14 FN1249-S Chr9 1740826 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1249-S Chr9 18899110 18899110 0 0 Insertion 2