FN1250-S Chr1 18218971 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr1 21197418 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN1250-S Chr1 24325444 24325464 0 0 Deletion 20 LOC_Os01g42740 ammonium transporter 2, putative, expressed FN1250-S Chr1 26359712 26359725 0 0 Deletion 13 FN1250-S Chr1 32029300 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN1250-S Chr1 32029301 G-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HOMO FN1250-S Chr1 34797091 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1250-S Chr10 14144966 14144966 0 0 Insertion 2 FN1250-S Chr10 14391829 14391834 0 0 Deletion 5 FN1250-S Chr10 17185360 Chr2 7353070 0 Translocation 0 LOC_Os10g32820 60S ribosomal protein L21-2, putative, expressed FN1250-S Chr10 17185531 Chr2 7353071 0 Translocation 0 LOC_Os10g32820 60S ribosomal protein L21-2, putative, expressed FN1250-S Chr10 4053004 4053009 0 0 Deletion 5 FN1250-S Chr11 7858701 7858711 0 0 Deletion 10 FN1250-S Chr12 10568836 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1250-S Chr12 12581629 12581630 0 0 Deletion 1 FN1250-S Chr12 19893496 19893497 0 0 Deletion 1 FN1250-S Chr12 2186867 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr12 2186869 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr12 621465 621465 0 0 Insertion 2 FN1250-S Chr12 7342365 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN1250-S Chr2 13059098 13059101 0 0 Deletion 3 FN1250-S Chr2 14774731 14774744 0 0 Deletion 13 LOC_Os02g25340 retrotransposon, putative, centromere-specific FN1250-S Chr2 1557705 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1250-S Chr2 29976362 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1250-S Chr2 31961111 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN1250-S Chr2 33398410 33407418 0 0 Deletion 9008 LOC_Os02g54520 MYB family transcription factor, putative, expressed FN1250-S Chr2 33398410 33407418 0 0 Deletion 9008 LOC_Os02g54530 SCP-like extracellular protein, expressed FN1250-S Chr2 8103302 8103302 0 0 Insertion 4 FN1250-S Chr3 12526906 12526921 0 0 Deletion 15 FN1250-S Chr3 17285583 17285584 0 0 Deletion 1 FN1250-S Chr3 22131864 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1250-S Chr3 29051881 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr3 329099 329118 0 0 Deletion 19 FN1250-S Chr3 34989154 C-A 0 0 Single Base Substitution 0 INTRON HET FN1250-S Chr4 1205334 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1250-S Chr4 12769031 12769033 0 0 Deletion 2 FN1250-S Chr4 12881188 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g22720 expressed protein FN1250-S Chr4 17666734 17666735 0 0 Deletion 1 FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06500 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06510 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06540 retrotransposon protein, putative, unclassified FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06550 retrotransposon, putative, centromere-specific, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06560 retrotransposon protein, putative, unclassified FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06580 retrotransposon protein, putative, unclassified FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06590 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06600 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06640 retrotransposon protein, putative, unclassified FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06650 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06660 retrotransposon protein, putative, Ty3-gypsy subclass FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06670 retrotransposon protein, putative, unclassified FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06700 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06710 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06734 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06770 argonaute, putative, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06780 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06790 2-aminoethanethiol dioxygenase, putative, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06800 hypothetical protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06820 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06830 hypothetical protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06840 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06850 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06860 peroxidase 28 precursor, putative, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06870 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06879 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06900 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06910 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06920 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06940 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06950 conserved hypothetical protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06960 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06970 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06980 retrotransposon protein, putative, Ty3-gypsy subclass FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g06990 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07000 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07040 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07070 retrotransposon protein, putative, unclassified FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07080 retrotransposon protein, putative, unclassified FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07090 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07100 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07110 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07120 retrotransposon, putative, centromere-specific FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07130 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07140 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07150 AGAP002737-PA, putative, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07190 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07200 S-domain receptor-like protein kinase, putative, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07210 hypothetical protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07220 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07230 retrotransposon protein, putative, Ty3-gypsy subclass FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07250 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07260 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07280 AGAP002737-PA, putative, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07290 retrotransposon protein, putative, Ty3-gypsy subclass FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07310 retrotransposon protein, putative, Ty3-gypsy subclass FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07330 retrotransposon protein, putative, Ty3-gypsy subclass FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07360 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07390 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07400 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07420 retrotransposon protein, putative, unclassified FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07430 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07440 retrotransposon, putative, centromere-specific FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07450 retrotransposon protein, putative, unclassified, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07460 retrotransposon, putative, centromere-specific, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07500 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07520 retrotransposon protein, putative, Ty3-gypsy subclass FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07540 expressed protein FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07550 retrotransposon, putative, centromere-specific, expressed FN1250-S Chr4 3416001 4022000 0 0 Deletion 606000 LOC_Os04g07560 retrotransposon, putative, centromere-specific FN1250-S Chr5 25856322 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr5 26300787 26300815 0 0 Deletion 28 LOC_Os05g45340 ATP binding protein, putative, expressed FN1250-S Chr5 27945830 27945837 0 0 Deletion 7 FN1250-S Chr5 614292 614298 0 0 Deletion 6 FN1250-S Chr6 13555114 13555117 0 0 Deletion 3 LOC_Os06g23210 ribosomal protein L30 containing protein, expressed FN1250-S Chr6 17003881 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1250-S Chr6 20478660 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr6 4233701 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1250-S Chr6 4377935 4377936 0 0 Deletion 1 FN1250-S Chr7 11897788 11897802 0 0 Deletion 14 FN1250-S Chr7 14699771 Chr2 33407456 0 Translocation 0 LOC_Os07g25640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr7 14699797 Chr2 33407058 0 Translocation 0 LOC_Os07g25640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1250-S Chr7 1809465 1809466 0 0 Deletion 1 FN1250-S Chr7 25676464 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g42885 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1250-S Chr7 27361661 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr7 671347 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr8 16235505 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr8 16235506 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr8 2659571 G-C 0 0 Single Base Substitution 0 INTRON HET FN1250-S Chr8 3643199 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1250-S Chr8 7510371 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1250-S Chr9 11294416 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1250-S Chr9 14073738 C-T 0 0 Single Base Substitution 0 INTERGENIC HET