FN1269-S Chr1 13143629 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1269-S Chr1 13143630 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g23380 stripe rust resistance protein Yr10, putative, expressed FN1269-S Chr1 16912059 16949154 0 0 Inversion 37095 FN1269-S Chr1 17004927 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr1 22792469 A-T 0 0 Single Base Substitution 0 INTRON HET FN1269-S Chr1 36310193 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr1 4807434 4807434 0 0 Insertion 2 FN1269-S Chr10 13118157 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr10 16674376 16674377 0 0 Deletion 1 FN1269-S Chr10 17659242 A-T 0 0 Single Base Substitution 0 INTRON HET FN1269-S Chr10 2233534 2233565 0 0 Deletion 31 FN1269-S Chr11 13555254 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr11 15143984 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g26450 retrotransposon, putative, centromere-specific FN1269-S Chr11 21280265 21280266 0 0 Deletion 1 FN1269-S Chr12 11698176 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1269-S Chr12 12032210 12282707 0 0 Inversion 250497 LOC_Os12g21820 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1269-S Chr12 13506038 13506047 0 0 Deletion 9 FN1269-S Chr12 13801876 Chr11 8348429 0 Translocation 0 LOC_Os11g14840 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr12 13805104 Chr11 8348421 0 Translocation 0 LOC_Os11g14840 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr12 13805104 Chr11 8348421 0 Translocation 0 LOC_Os12g24220 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr12 14278209 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr12 20827046 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1269-S Chr12 2181166 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr12 22556214 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1269-S Chr12 3123756 Chr9 5408876 0 Translocation 0 LOC_Os12g06480 PHD-finger family protein, expressed FN1269-S Chr12 3123762 Chr9 5410515 0 Translocation 0 LOC_Os12g06480 PHD-finger family protein, expressed FN1269-S Chr12 3423165 3423264 0 0 Deletion 99 FN1269-S Chr12 6558858 6558860 0 0 Deletion 2 FN1269-S Chr2 16312423 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1269-S Chr2 16632726 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g28074 XRN 5-3 exonuclease N-terminus family protein, expressed FN1269-S Chr2 31002888 31002888 0 0 Insertion 4 FN1269-S Chr2 31985103 31985103 0 0 Insertion 1 FN1269-S Chr3 25307441 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1269-S Chr3 31464835 31464844 0 0 Deletion 9 LOC_Os03g55290 GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed FN1269-S Chr3 36225829 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr4 17513199 17513204 0 0 Deletion 5 LOC_Os04g29450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1269-S Chr4 18059425 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr4 18944967 18944971 0 0 Deletion 4 FN1269-S Chr4 21674521 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr4 32060142 A-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os04g53800 leucoanthocyanidin reductase, putative, expressed FN1269-S Chr4 5671722 5671723 0 0 Deletion 1 FN1269-S Chr4 8530585 A-G 0 0 Single Base Substitution 0 INTRON HET FN1269-S Chr5 16145148 T-G 0 0 Single Base Substitution 0 INTRON HET FN1269-S Chr5 21632714 21632716 0 0 Deletion 2 FN1269-S Chr5 4904064 4904075 0 0 Deletion 11 FN1269-S Chr6 7417929 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN1269-S Chr6 7675555 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1269-S Chr7 154068 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1269-S Chr7 6834248 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g12210 expressed protein FN1269-S Chr7 6834249 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1269-S Chr7 6839368 6839369 0 0 Deletion 1 FN1269-S Chr7 7844806 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1269-S Chr8 12404345 12404346 0 0 Deletion 1 FN1269-S Chr8 21197736 21204673 0 0 Deletion 6937 LOC_Os08g33860 zinc finger, C3HC4 type, putative, expressed FN1269-S Chr8 21197736 21204673 0 0 Deletion 6937 LOC_Os08g33870 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr8 2177182 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1269-S Chr8 25138879 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g39710 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr8 25918272 C-A 0 0 Single Base Substitution 0 INTRON HET FN1269-S Chr8 3011811 C-T 0 0 Single Base Substitution 0 INTRON HET FN1269-S Chr8 7531325 C-T 0 0 Single Base Substitution 0 INTRON HET FN1269-S Chr8 8687952 8687953 0 0 Deletion 1 FN1269-S Chr9 12661906 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21580 OsFBX324 - F-box domain containing protein, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21590 conserved hypothetical protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21620 OsFBX325 - F-box domain containing protein, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21640 retrotransposon protein, putative, Ty3-gypsy subclass FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21660 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21670 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21680 transposon protein, putative, unclassified, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21689 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21700 OsFBX326 - F-box domain containing protein, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21710 AN1-like zinc finger domain containing protein, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21720 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21740 armadillo/beta-catenin repeat family protein, putative, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21750 hypothetical protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21760 proteasome subunit, putative, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21770 ES43 protein, putative, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21780 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21790 hypothetical protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21796 OsFBX327 - F-box domain containing protein, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21802 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21810 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21820 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21830 retrotransposon protein, putative, unclassified FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21840 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21850 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21880 hypothetical protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21890 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21900 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21910 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21919 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21930 expressed protein FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1269-S Chr9 13052262 13292537 0 0 Deletion 240275 LOC_Os09g21950 retrotransposon protein, putative, Ty3-gypsy subclass FN1269-S Chr9 13059938 13439403 0 0 Inversion 379465 FN1269-S Chr9 13236973 13439394 0 0 Inversion 202421 LOC_Os09g21850 retrotransposon protein, putative, unclassified, expressed FN1269-S Chr9 2705294 2705294 0 0 Insertion 1 LOC_Os09g05030 armadillo/beta-catenin-like repeat family protein, expressed FN1269-S Chr9 5101207 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1269-S Chr9 7845401 7845403 0 0 Deletion 2