FN1273-S Chr1 15972390 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g28530 retrotransposon protein, putative, Ty3-gypsy subclass FN1273-S Chr1 16838106 C-T 0 0 Single Base Substitution 0 INTRON HET FN1273-S Chr1 2329880 2329880 0 0 Insertion 2 FN1273-S Chr1 31468985 31468985 0 0 Insertion 1 LOC_Os01g54690 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr1 34655731 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1273-S Chr1 4976696 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr10 12575307 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr10 2702948 2702952 0 0 Deletion 4 FN1273-S Chr11 13792222 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr11 14111218 T-A 0 0 Single Base Substitution 0 INTRON HET FN1273-S Chr11 18038516 18038519 0 0 Deletion 3 FN1273-S Chr11 20616772 20616773 0 0 Deletion 1 FN1273-S Chr11 23879726 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g40050 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr11 28237508 28237509 0 0 Deletion 1 LOC_Os11g46980 receptor-like protein kinase 2 precursor, putative, expressed FN1273-S Chr11 8239495 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28590 ATPase 2, putative, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28600 retrotransposon protein, putative, unclassified FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28610 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28620 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28630 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28640 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28659 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28670 retrotransposon protein, putative, unclassified FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28710 ATPase 3, putative, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28720 hypothetical protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28750 TPD1, putative, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28760 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28770 POEI19 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28780 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28790 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28820 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28830 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28840 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28850 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28860 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28870 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28880 LTPL110 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28890 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28900 retrotransposon protein, putative, unclassified FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28910 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28930 retrotransposon protein, putative, unclassified FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28940 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28950 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28960 retrotransposon protein, putative, unclassified FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28980 retrotransposon protein, putative, Ty3-gypsy subclass FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g28990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29010 retrotransposon protein, putative, Ty3-gypsy subclass FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29030 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29040 LTPL111 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29050 hypothetical protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29060 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29080 retrotransposon protein, putative, Ty3-gypsy subclass FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29100 retrotransposon protein, putative, Ty3-gypsy subclass FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29110 retrotransposon protein, putative, Ty3-gypsy subclass FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29130 retrotransposon protein, putative, Ty3-gypsy subclass FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29160 LTPL105 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29170 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29180 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29220 nodulin MtN3 family protein, putative, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29240 latency associated nuclear antigen, putative FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29280 disease resistance protein RGA3, putative, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29290 disease resistance protein RGA3, putative, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29300 CESA10 - cellulose synthase, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29320 expressed protein FN1273-S Chr12 16901001 17398000 0 0 Deletion 497000 LOC_Os12g29330 no apical meristem protein, putative, expressed FN1273-S Chr12 17220099 Chr8 4874715 0 Translocation 0 LOC_Os08g08460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 17220099 Chr8 4874715 0 Translocation 0 LOC_Os12g29070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 19391966 19391967 0 0 Deletion 1 LOC_Os12g32150 expressed protein FN1273-S Chr12 2019113 2019191 0 0 Deletion 78 LOC_Os12g04750 OsDegp14 - Putative Deg protease homologue, expressed FN1273-S Chr12 20211648 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g33450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr12 20351894 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1273-S Chr12 2874431 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr12 2874432 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr12 320291 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1273-S Chr12 5714279 5714279 0 0 Insertion 4 FN1273-S Chr2 1548800 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr2 17802752 17802753 0 0 Deletion 1 FN1273-S Chr2 2754197 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr2 31095157 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1273-S Chr2 32491185 32491200 0 0 Deletion 15 LOC_Os02g53100 WRKY32, expressed FN1273-S Chr2 4371180 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr2 4388655 4449927 0 0 Inversion 61272 LOC_Os02g08364 protein phosphatase 2C, putative, expressed FN1273-S Chr2 4394509 4449938 0 0 Inversion 55429 LOC_Os02g08364 protein phosphatase 2C, putative, expressed FN1273-S Chr2 5710753 5710753 0 0 Insertion 1 FN1273-S Chr3 13778519 C-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN1273-S Chr3 14444878 14444878 0 0 Insertion 1 FN1273-S Chr3 15588400 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr3 28257341 G-C 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g49620 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed FN1273-S Chr3 32509034 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr4 18437001 18451000 0 0 Deletion 14000 LOC_Os04g30860 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN1273-S Chr4 18437001 18451000 0 0 Deletion 14000 LOC_Os04g30870 transposon protein, putative, unclassified, expressed FN1273-S Chr5 10648001 10670000 0 0 Deletion 22000 LOC_Os05g18419 retrotransposon, putative, centromere-specific FN1273-S Chr5 10648001 10670000 0 0 Deletion 22000 LOC_Os05g18446 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1273-S Chr5 21876949 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN1273-S Chr5 21876963 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN1273-S Chr5 21877555 21877591 0 0 Deletion 36 FN1273-S Chr5 3024378 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1273-S Chr5 9847410 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1273-S Chr6 11400836 11400843 0 0 Deletion 7 FN1273-S Chr6 14638022 Chr2 4388664 0 Translocation 0 FN1273-S Chr6 14638054 Chr2 4394511 0 Translocation 0 FN1273-S Chr6 23827034 23827042 0 0 Deletion 8 LOC_Os06g40050 mitochondrial carrier protein, putative, expressed FN1273-S Chr6 24414618 24414620 0 0 Deletion 2 FN1273-S Chr6 27291380 A-T 0 0 Single Base Substitution 0 INTRON HET FN1273-S Chr6 27500344 27500345 0 0 Deletion 1 FN1273-S Chr6 29823289 29823325 0 0 Deletion 36 FN1273-S Chr6 30937224 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr7 11716591 11716594 0 0 Deletion 3 FN1273-S Chr7 27055014 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1273-S Chr8 1160456 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1273-S Chr8 19080532 19080533 0 0 Deletion 1 FN1273-S Chr8 27389256 27389256 0 0 Insertion 1 FN1273-S Chr8 4468494 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1273-S Chr8 7771235 7771242 0 0 Deletion 7 LOC_Os08g13080 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr8 8425383 8425384 0 0 Deletion 1 FN1273-S Chr9 10048873 10048877 0 0 Deletion 4 FN1273-S Chr9 13496969 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g22340 retrotransposon protein, putative, unclassified, expressed FN1273-S Chr9 8343355 8343359 0 0 Deletion 4