FN1322-S Chr1 19949028 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1322-S Chr10 12407415 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1322-S Chr10 21599073 21599084 0 0 Deletion 11 LOC_Os10g40290 pectinacetylesterase domain containing protein, expressed FN1322-S Chr10 2233698 2233730 0 0 Deletion 32 FN1322-S Chr10 22933805 22937203 0 0 Deletion 3398 LOC_Os10g42520 expressed protein FN1322-S Chr11 11632792 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1322-S Chr11 20404988 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1322-S Chr11 6353552 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1322-S Chr12 3134922 3134923 0 0 Deletion 1 FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g19924 aminotransferase, classes I and II, domain containing protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g19950 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g19960 transposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g19970 aminotransferase, classes I and II, domain containing protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g19980 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g19990 reticulon domain containing protein, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20000 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20010 retrotransposon protein, putative, LINE subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20040 loricrin, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20060 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20070 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20080 retrotransposon protein, putative, unclassified FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20090 retrotransposon protein, putative, unclassified FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20130 DEFL72 - Defensin and Defensin-like DEFL family FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20140 protein kinase domain containing protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20150 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20160 PPR repeat domain containing protein, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20170 drought induced 19 protein, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20180 hypothetical protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20190 Leucine Rich Repeat family protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20200 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20210 disease resistance protein RGA1, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20220 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20230 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20240 retrotransposon protein, putative, unclassified FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20250 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20260 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20270 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20280 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20290 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20300 hypothetical protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20310 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20320 OsSAUR7 - Auxin-responsive SAUR gene family member, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20330 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20340 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20350 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20360 tyrosine aminotransferase, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20370 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20380 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20394 dnaJ domain containing protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20410 GTP binding protein, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20420 retrotransposon protein, putative, LINE subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20430 WD domain, G-beta repeat domain containing protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20450 hypothetical protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20460 Leucine Rich Repeat family protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20470 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20480 resistance protein candidate, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20490 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20500 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20510 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20520 retrotransposon, putative, centromere-specific FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20530 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20540 fasciclin domain containing protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20550 hypothetical protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20560 fasciclin domain containing protein, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20570 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20590 MBTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20600 BTB/POZ domain containing protein, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20620 speckle-type POZ protein, putative, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20630 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20640 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20670 retrotransposon protein, putative, unclassified FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20690 speckle-type POZ protein, putative FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20700 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20710 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20720 MBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20729 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20740 retrotransposon protein, putative, unclassified FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20750 expressed protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20760 transposon protein, putative, Mariner sub-class, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20770 transposon protein, putative, Pong sub-class, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20780 transposon protein, putative, Pong sub-class, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20790 hypothetical protein FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20800 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715001 12292000 0 0 Deletion 577000 LOC_Os02g20810 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 11715248 12294294 0 0 Inversion 579046 FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32860 poly synthetase 3, putative, expressed FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32870 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32900 expressed protein FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32910 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32920 expressed protein FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32930 bile acid sodium symporter, putative, expressed FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32940 expressed protein FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32950 RCN2 Centroradialis-like1 homologous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed FN1322-S Chr2 19510001 19590000 0 0 Deletion 80000 LOC_Os02g32960 expressed protein FN1322-S Chr2 19894239 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1322-S Chr2 20824797 20824801 0 0 Deletion 4 LOC_Os02g34710 expressed protein FN1322-S Chr2 20878486 A-T 0 0 Single Base Substitution 0 INTRON HET FN1322-S Chr2 2123808 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1322-S Chr2 3697505 3697508 0 0 Deletion 3 LOC_Os02g07190 expressed protein FN1322-S Chr2 9502480 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN1322-S Chr2 978590 978614 0 0 Deletion 24 FN1322-S Chr3 19357729 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1322-S Chr3 29450160 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN1322-S Chr3 9359541 9359544 0 0 Deletion 3 LOC_Os03g16850 dof zinc finger domain containing protein, putative, expressed FN1322-S Chr4 24331204 24331227 0 0 Deletion 23 LOC_Os04g41000 expressed protein FN1322-S Chr5 10037615 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1322-S Chr5 1517809 1517815 0 0 Deletion 6 LOC_Os05g03574 expressed protein FN1322-S Chr5 22039154 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1322-S Chr6 241828 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g01400 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed FN1322-S Chr7 11897199 11897202 0 0 Deletion 3 FN1322-S Chr7 17459989 17459992 0 0 Deletion 3 FN1322-S Chr7 17680150 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1322-S Chr7 21026407 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g35100 retrotransposon protein, putative, unclassified, expressed FN1322-S Chr8 27105496 27105499 0 0 Deletion 3 FN1322-S Chr8 27181345 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1322-S Chr8 5208106 Chr2 12292266 0 Translocation 0 FN1322-S Chr9 10522923 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1322-S Chr9 12670968 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1322-S Chr9 12699826 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1322-S Chr9 12914047 12914053 0 0 Deletion 6 LOC_Os09g21380 expressed protein FN1322-S Chr9 15452477 A-T 0 0 Single Base Substitution 0 INTRON HET FN1322-S Chr9 16766173 16766177 0 0 Deletion 4 LOC_Os09g27590 expressed protein FN1322-S Chr9 18746135 18746138 0 0 Deletion 3 FN1322-S Chr9 19373004 19373007 0 0 Deletion 3 FN1322-S Chr9 3590083 3590095 0 0 Deletion 12 FN1322-S Chr9 3635021 3635032 0 0 Deletion 11