FN1340-S Chr1 14726756 A-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g25970 retrotransposon protein, putative, Ty1-copia subclass FN1340-S Chr1 14954797 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1340-S Chr1 32226608 32226609 0 0 Deletion 1 FN1340-S Chr1 37911896 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1340-S Chr1 5964114 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1340-S Chr1 7824111 C-T 0 0 Single Base Substitution 0 INTRON HET FN1340-S Chr1 8748919 8822073 0 0 Inversion 73154 LOC_Os01g15680 transferase, putative, expressed FN1340-S Chr10 15135031 15135033 0 0 Deletion 2 LOC_Os10g29040 expressed protein FN1340-S Chr10 4221771 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr10 750397 G-T 0 0 Single Base Substitution 0 INTRON HET FN1340-S Chr11 15099185 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr11 18164729 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr11 22805918 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1340-S Chr11 23663222 Chr6 11605656 0 Translocation 0 FN1340-S Chr11 5283434 5283854 0 0 Deletion 420 LOC_Os11g09864 wali7, putative, expressed FN1340-S Chr11 9674140 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr12 15167001 15197000 0 0 Deletion 30000 LOC_Os12g26090 expressed protein FN1340-S Chr12 15167001 15197000 0 0 Deletion 30000 LOC_Os12g26100 hypothetical protein FN1340-S Chr12 15167001 15197000 0 0 Deletion 30000 LOC_Os12g26110 transposon protein, putative, CACTA, En/Spm sub-class FN1340-S Chr12 15202001 15267000 0 0 Deletion 65000 LOC_Os12g26140 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr12 15202001 15267000 0 0 Deletion 65000 LOC_Os12g26150 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr12 15202001 15267000 0 0 Deletion 65000 LOC_Os12g26160 expressed protein FN1340-S Chr12 15202001 15267000 0 0 Deletion 65000 LOC_Os12g26170 expressed protein FN1340-S Chr12 15202001 15267000 0 0 Deletion 65000 LOC_Os12g26180 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr12 15202001 15267000 0 0 Deletion 65000 LOC_Os12g26190 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr12 17664451 17664451 0 0 Insertion 1 FN1340-S Chr12 22476664 22476665 0 0 Deletion 1 FN1340-S Chr12 24164062 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g39260 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr2 13738184 13738185 0 0 Deletion 1 LOC_Os02g23821 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr2 19023097 A-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN1340-S Chr2 5527731 5527734 0 0 Deletion 3 FN1340-S Chr3 18003541 18003542 0 0 Deletion 1 FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41150 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41154 hypothetical protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41160 RNA-directed DNA polymerase, putative FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41170 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41180 transposon protein, putative, CACTA, En/Spm sub-class FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41200 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41229 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41260 hypothetical protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41280 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41290 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41300 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41310 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41320 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41330 DUF260 domain containing protein, putative, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41339 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41350 BTBN7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41380 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41390 ZOS3-15 - C2H2 zinc finger protein, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41400 EBNA-1, putative, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41419 serpin domain containing protein, putative, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41438 serpin domain containing protein, putative, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41460 CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41470 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41480 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41500 expressed protein FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41510 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN1340-S Chr3 22880122 23098055 0 0 Deletion 217933 LOC_Os03g41530 single-stranded DNA-binding protein, putative, expressed FN1340-S Chr3 22880751 Chr2 18517332 0 Translocation 0 LOC_Os02g31000 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr3 24815524 T-A 0 0 Single Base Substitution 0 INTRON HET FN1340-S Chr3 28347247 28347247 0 0 Insertion 1 FN1340-S Chr3 3058254 A-C 0 0 Single Base Substitution 0 INTRON HET FN1340-S Chr3 3493182 3493184 0 0 Deletion 2 FN1340-S Chr3 36023330 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g63790 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr3 502103 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr3 502107 502111 0 0 Deletion 4 FN1340-S Chr3 5024961 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr3 7355950 7355962 0 0 Deletion 12 FN1340-S Chr4 10132283 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18360 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr4 11899988 11899988 0 0 Insertion 1 FN1340-S Chr4 11921176 12283997 0 0 Inversion 362821 FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21720 N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21730 XH domain containing protein FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21740 expressed protein FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21780 expressed protein FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21790 OsWAK34 - OsWAK receptor-like protein kinase, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21800 retrotransposon protein, putative, LINE subclass FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21810 transposon protein, putative, unclassified, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21820 OsWAK33 - OsWAK receptor-like protein OsWAK-RLP, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21830 hypothetical protein FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21840 expressed protein FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21850 expressed protein FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21860 transposon protein, putative, Pong sub-class, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21870 transposon protein, putative, Pong sub-class, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21880 expressed protein FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21890 disease resistance protein RPM1, putative, expressed FN1340-S Chr4 12284001 12406000 0 0 Deletion 122000 LOC_Os04g21900 expressed protein FN1340-S Chr4 12661607 12661614 0 0 Deletion 7 FN1340-S Chr4 15290461 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr4 27725275 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1340-S Chr4 3836146 3836147 0 0 Deletion 1 FN1340-S Chr4 593247 593248 0 0 Deletion 1 FN1340-S Chr5 11576164 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g19870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1340-S Chr5 15088355 15088384 0 0 Deletion 29 FN1340-S Chr5 17232399 Chr3 20467841 0 Translocation 0 LOC_Os03g36890 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr5 17232399 Chr3 20467841 0 Translocation 0 LOC_Os05g29780 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr5 24270934 24270935 0 0 Deletion 1 FN1340-S Chr5 3682734 G-A 0 0 Single Base Substitution 0 INTRON HET FN1340-S Chr6 11260293 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr6 19691116 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr6 27130855 27130855 0 0 Insertion 1 FN1340-S Chr6 5770035 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr7 149504 149505 0 0 Deletion 1 FN1340-S Chr7 15473246 15473312 0 0 Deletion 66 LOC_Os07g26780 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr7 15473248 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g26780 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr7 15473249 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1340-S Chr7 15477806 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1340-S Chr7 21303615 21303617 0 0 Deletion 2 FN1340-S Chr7 2458484 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN1340-S Chr7 28354245 28354245 0 0 Insertion 2 FN1340-S Chr7 4213510 4213510 0 0 Insertion 2 FN1340-S Chr8 1556824 1556828 0 0 Deletion 4 FN1340-S Chr8 17381212 17381216 0 0 Deletion 4 FN1340-S Chr8 20569943 20569947 0 0 Deletion 4 FN1340-S Chr8 23166311 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr8 5237860 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr8 7784390 7856778 0 0 Inversion 72388 LOC_Os08g13210 expressed protein FN1340-S Chr8 7784405 7856785 0 0 Inversion 72380 LOC_Os08g13210 expressed protein FN1340-S Chr9 1572989 1572995 0 0 Deletion 6 LOC_Os09g03270 retrotransposon protein, putative, unclassified, expressed FN1340-S Chr9 1589119 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g03300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1340-S Chr9 17327415 17327416 0 0 Deletion 1 LOC_Os09g28480 expressed protein FN1340-S Chr9 17327415 17327416 0 0 Deletion 1 LOC_Os09g28489 expressed protein FN1340-S Chr9 4062920 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1340-S Chr9 4062990 4063002 0 0 Deletion 12 FN1340-S Chr9 5896160 5896161 0 0 Deletion 1 FN1340-S Chr9 9030500 9030502 0 0 Deletion 2