FN1379-S Chr1 16831429 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr1 19519264 19519264 0 0 Insertion 4 FN1379-S Chr1 21115852 21115852 0 0 Insertion 1 FN1379-S Chr1 23078274 G-T 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr1 23696551 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr1 2527098 2527099 0 0 Deletion 1 FN1379-S Chr1 26822652 26822660 0 0 Deletion 8 LOC_Os01g46984 expressed protein FN1379-S Chr1 40685071 40685074 0 0 Deletion 3 FN1379-S Chr1 7987320 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr1 878696 878696 0 0 Insertion 2 FN1379-S Chr10 13610698 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr10 14849589 14849590 0 0 Deletion 1 FN1379-S Chr10 18221691 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr10 20611555 20611556 0 0 Deletion 1 FN1379-S Chr10 21385505 21385529 0 0 Deletion 24 FN1379-S Chr10 5167946 5167946 0 0 Insertion 2 FN1379-S Chr11 13191982 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr11 13771606 13771620 0 0 Deletion 14 FN1379-S Chr11 20119112 20178196 0 0 Inversion 59084 FN1379-S Chr11 21378682 21378700 0 0 Deletion 18 FN1379-S Chr12 10856436 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr12 13578179 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g23880 transposon protein, putative, unclassified, expressed FN1379-S Chr12 15378508 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr12 461388 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr12 5109676 T-A 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr12 7591899 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1379-S Chr2 19445033 A-G 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr2 21803328 21803329 0 0 Deletion 1 FN1379-S Chr2 27289986 27290042 0 0 Deletion 56 FN1379-S Chr2 6806201 17449712 0 0 Inversion 10643511 LOC_Os02g29380 expressed protein FN1379-S Chr2 6807058 17449698 0 0 Inversion 10642640 LOC_Os02g29380 expressed protein FN1379-S Chr3 114332 114334 0 0 Deletion 2 FN1379-S Chr3 12442289 T-A 0 0 Single Base Substitution 0 INTRON Homo FN1379-S Chr3 14103551 14103551 0 0 Insertion 2 FN1379-S Chr3 19747713 T-C 0 0 Single Base Substitution 0 INTRON Homo FN1379-S Chr3 22362433 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1379-S Chr3 28013903 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr3 31897807 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr3 33754256 33754264 0 0 Deletion 8 FN1379-S Chr3 36148164 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr3 4336513 4336514 0 0 Deletion 1 FN1379-S Chr4 18361909 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN1379-S Chr4 20012972 20012973 0 0 Deletion 1 FN1379-S Chr4 22094978 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr4 28483592 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr4 29712006 G-A 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr4 31881381 31881383 0 0 Deletion 2 FN1379-S Chr4 33221060 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr4 5461058 A-T 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr4 5461059 C-T 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr4 7477476 7477477 0 0 Deletion 1 FN1379-S Chr4 8520812 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1379-S Chr4 8619258 8619258 0 0 Insertion 1 FN1379-S Chr5 10776599 10776599 0 0 Insertion 4 FN1379-S Chr5 11511193 11511193 0 0 Insertion 1 FN1379-S Chr5 11831603 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr5 16351030 16351031 0 0 Deletion 1 FN1379-S Chr5 17464032 17464032 0 0 Insertion 2 FN1379-S Chr5 19878929 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1379-S Chr5 7407708 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1379-S Chr6 11197683 11197684 0 0 Deletion 1 FN1379-S Chr6 12194303 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr6 12281400 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1379-S Chr6 16401373 T-C 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31340 hypothetical protein FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31360 expressed protein FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31370 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31400 retrotransposon protein, putative, Ty1-copia subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31410 transposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31460 retrotransposon protein, putative, Ty3-gypsy subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31470 retrotransposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31500 hypothetical protein FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31520 hypothetical protein FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31544 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31550 retrotransposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31556 transposon protein, putative, CACTA, En/Spm sub-class FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31562 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31570 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31580 hypothetical protein FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31589 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31630 retrotransposon protein, putative, Ty3-gypsy subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31650 retrotransposon protein, putative, Ty3-gypsy subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31660 retrotransposon protein, putative, Ty3-gypsy subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31670 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31680 retrotransposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31690 transposon protein, putative, CACTA, En/Spm sub-class FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31710 retrotransposon, putative, centromere-specific, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31720 retrotransposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31740 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31750 retrotransposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31760 retrotransposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31770 expressed protein FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31780 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31800 THION2 - Plant thionin family protein precursor, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31810 hypothetical protein FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31820 transposon protein, putative, CACTA, En/Spm sub-class FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31830 retrotransposon protein, putative, Ty3-gypsy subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31850 retrotransposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31860 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31890 THION3 - Plant thionin family protein precursor, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31900 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31910 retrotransposon protein, putative, Ty3-gypsy subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31920 retrotransposon, putative, centromere-specific, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31930 thionin precursor protein, putative, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31940 transposon protein, putative, CACTA, En/Spm sub-class FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31950 retrotransposon, putative, centromere-specific, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31960 THION5 - Plant thionin family protein precursor, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31980 transposon protein, putative, CACTA, En/Spm sub-class FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g31990 retrotransposon, putative, centromere-specific, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32020 THION6 - Plant thionin family protein precursor, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32030 transposon protein, putative, CACTA, En/Spm sub-class FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32040 transposon protein, putative, unclassified FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32070 retrotransposon protein, putative, Ty3-gypsy subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32090 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32100 retrotransposon protein, putative, Ty3-gypsy subclass FN1379-S Chr6 18234001 18688000 0 0 Deletion 454000 LOC_Os06g32110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1379-S Chr6 20956952 20956993 0 0 Deletion 41 FN1379-S Chr6 21831021 21831022 0 0 Deletion 1 FN1379-S Chr6 21992530 21992558 0 0 Deletion 28 LOC_Os06g37224 cytochrome P450, putative, expressed FN1379-S Chr6 25455641 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr6 2598677 2598680 0 0 Deletion 3 FN1379-S Chr6 2755843 2755845 0 0 Deletion 2 FN1379-S Chr7 12497096 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr7 14044458 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g24690 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr7 17070887 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g29160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1379-S Chr7 17228502 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr7 23610120 23610120 0 0 Insertion 2 FN1379-S Chr7 27090740 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g45410 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1379-S Chr7 27847003 27847009 0 0 Deletion 6 LOC_Os07g46610 cis-zeatin O-glucosyltransferase, putative, expressed FN1379-S Chr7 4900664 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr7 6025689 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN1379-S Chr7 7872830 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr8 10696815 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g17460 retrotransposon protein, putative, unclassified FN1379-S Chr8 10696816 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g17460 retrotransposon protein, putative, unclassified FN1379-S Chr8 11022296 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g17980 photosystem II P680 chlorophyll A apoprotein, putative, expressed FN1379-S Chr8 11149381 G-A 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr8 11588974 A-C 0 0 Single Base Substitution 0 UTR_3_PRIME Homo FN1379-S Chr8 20460744 20767020 0 0 Inversion 306276 LOC_Os08g32970 annexin, putative, expressed FN1379-S Chr8 20460755 21027999 0 0 Inversion 567244 LOC_Os08g32970 annexin, putative, expressed FN1379-S Chr8 20460755 21027999 0 0 Inversion 567244 LOC_Os08g33670 no apical meristem protein, putative, expressed FN1379-S Chr8 20969080 20969087 0 0 Deletion 7 FN1379-S Chr8 24344729 24344729 0 0 Insertion 1 FN1379-S Chr8 2446407 2446407 0 0 Insertion 1 LOC_Os08g04850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1379-S Chr8 25211614 G-T 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr8 25211625 G-T 0 0 Single Base Substitution 0 INTRON HET FN1379-S Chr8 5627081 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1379-S Chr9 1254066 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1379-S Chr9 20442720 20442722 0 0 Deletion 2 FN1379-S Chr9 20511150 20511157 0 0 Deletion 7 LOC_Os09g35660 retrotransposon protein, putative, unclassified, expressed FN1379-S Chr9 5416567 5416568 0 0 Deletion 1