FN1382-S Chr1 10227563 10227563 0 0 Insertion 2 FN1382-S Chr1 18459696 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1382-S Chr1 20803992 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr1 21018735 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN1382-S Chr1 27253339 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr1 29984483 29984485 0 0 Deletion 2 FN1382-S Chr10 11467452 11467459 0 0 Deletion 7 FN1382-S Chr10 12844447 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr10 3690114 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr11 20759384 20759386 0 0 Deletion 2 FN1382-S Chr11 27790758 27790759 0 0 Deletion 1 LOC_Os11g45924 WRKY41, expressed FN1382-S Chr11 4118738 4118738 0 0 Insertion 2 FN1382-S Chr11 6539682 8530347 0 0 Inversion 1990665 LOC_Os11g11780 cysteine-rich receptor-like protein kinase 21 precursor, putative, expressed FN1382-S Chr11 6539682 8530347 0 0 Inversion 1990665 LOC_Os11g15130 jasmonate O-methyltransferase, putative, expressed FN1382-S Chr11 7966925 G-A 0 0 Single Base Substitution 0 INTRON HET FN1382-S Chr11 9370680 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g16890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1382-S Chr11 9370681 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g16890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1382-S Chr12 12649558 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1382-S Chr12 12895631 Chr4 29635118 0 Translocation 0 FN1382-S Chr12 22142658 Chr6 13307836 0 Translocation 0 FN1382-S Chr12 22861830 22861831 0 0 Deletion 1 FN1382-S Chr12 23171254 A-G 0 0 Single Base Substitution 0 INTRON HET FN1382-S Chr12 24539957 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr12 4380447 4380449 0 0 Deletion 2 LOC_Os12g08620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1382-S Chr12 7553355 7553363 0 0 Deletion 8 FN1382-S Chr2 14886056 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g25490 retrotransposon protein, putative, Ty1-copia subclass FN1382-S Chr2 15440402 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr2 18611184 18611185 0 0 Deletion 1 FN1382-S Chr2 22575321 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr2 3936923 G-T 0 0 Single Base Substitution 0 INTRON HET FN1382-S Chr3 12031403 T-C 0 0 Single Base Substitution 0 INTRON HET FN1382-S Chr3 13018320 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr3 14707062 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr3 1812947 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1382-S Chr3 19498150 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g34240 retrotransposon protein, putative, unclassified, expressed FN1382-S Chr3 20942001 21010000 0 0 Deletion 68000 LOC_Os03g37780 expressed protein FN1382-S Chr3 20942001 21010000 0 0 Deletion 68000 LOC_Os03g37790 hAT dimerisation domain-containing protein, putative, expressed FN1382-S Chr3 20942001 21010000 0 0 Deletion 68000 LOC_Os03g37800 retrotransposon protein, putative, unclassified, expressed FN1382-S Chr3 20942001 21010000 0 0 Deletion 68000 LOC_Os03g37810 expressed protein FN1382-S Chr3 20942001 21010000 0 0 Deletion 68000 LOC_Os03g37820 expressed protein FN1382-S Chr3 20942001 21010000 0 0 Deletion 68000 LOC_Os03g37830 potassium transporter, putative, expressed FN1382-S Chr3 20942001 21010000 0 0 Deletion 68000 LOC_Os03g37840 potassium transporter, putative, expressed FN1382-S Chr3 21165960 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1382-S Chr3 29310073 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g51230 SNF2 family N-terminal domain containing protein, expressed FN1382-S Chr3 32996187 32996215 0 0 Deletion 28 FN1382-S Chr3 35517792 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g62760 expressed protein FN1382-S Chr3 36183342 36183473 0 0 Deletion 131 FN1382-S Chr3 36206647 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr3 677160 T-C 0 0 Single Base Substitution 0 INTRON HET FN1382-S Chr3 677163 677168 0 0 Deletion 5 FN1382-S Chr4 13449686 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1382-S Chr4 22247414 22247419 0 0 Deletion 5 FN1382-S Chr4 7857888 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1382-S Chr4 9290548 9290588 0 0 Deletion 40 FN1382-S Chr5 23802910 23948863 0 0 Inversion 145953 LOC_Os05g40550 expressed protein FN1382-S Chr5 23803597 23948823 0 0 Inversion 145226 LOC_Os05g40560 retrotransposon protein, putative, unclassified, expressed FN1382-S Chr5 25064893 25518691 0 0 Inversion 453798 FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43210 transposon protein, putative, unclassified, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43230 oryzain alpha chain precursor, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43240 jacalin-like lectin domain containing protein, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43252 expressed protein FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43280 MATH domain containing protein, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43290 expressed protein FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43300 expressed protein FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43310 photosystem II reaction center W protein, chloroplast precursor, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43330 expressed protein FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43340 retrotransposon protein, putative, unclassified, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43360 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43374 pseudouridylate synthase, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43380 tesmin/TSO1-like CXC domain containing protein, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43390 signal recognition particle 54 kDa protein, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43400 expressed protein FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43410 retrotransposon protein, putative, unclassified, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43420 retrotransposon protein, putative, unclassified, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43440 single-stranded DNA-binding protein, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43450 transcription initiation factor IIF beta subunit, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43460 DUF567 domain containing protein, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43470 outer membrane protein, OMP85 family, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43480 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43490 OsFBX169 - F-box domain containing protein, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43510 decarboxylase, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43520 BSD, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43530 CSLC7 - cellulose synthase-like family C, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43540 transmembrane protein 56, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43550 Eukaryotic aspartyl protease domain containing protein, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43560 AGAP007115-PA, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43570 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43576 radical SAM enzyme, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43582 tRNA methyltran, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43590 serpin domain containing protein, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43595 expressed protein FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43600 expressed protein FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43610 ATBARD1/BARD1, putative, expressed FN1382-S Chr5 25104001 25369000 0 0 Deletion 265000 LOC_Os05g43630 transposon protein, putative, Pong sub-class, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43640 retrotransposon, putative, centromere-specific, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43650 expressed protein FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43660 expressed protein FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43670 IQ calmodulin-binding motif family protein, putative, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43680 expressed protein FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43690 glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43700 expressed protein FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43720 transposon protein, putative, unclassified FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43730 retrotransposon protein, putative, unclassified, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43740 retrotransposon protein, putative, unclassified, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43750 hypothetical protein FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43760 TCP family transcription factor, putative, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43770 NLI interacting factor-like phosphatase, putative, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43780 ESP1, putative, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43790 DUF803 domain containing, putative, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43800 expressed protein FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43810 expressed protein FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43820 ras-related protein, putative, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43830 hydrolase, alpha/beta fold family domain containing protein, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43840 CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43850 OsFBT9 - F-box and tubby domain containing protein, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43860 expressed protein FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43870 myosin heavy chain-related, putative, expressed FN1382-S Chr5 25378001 25519000 0 0 Deletion 141000 LOC_Os05g43880 gibberellin 2-beta-dioxygenase, putative, expressed FN1382-S Chr5 3870893 Chr1 37038515 0 Translocation 0 FN1382-S Chr5 3870905 5447835 0 0 Inversion 1576930 LOC_Os05g09640 uncharacterized protein At4g06744 precursor, putative, expressed FN1382-S Chr5 5447819 Chr1 37038519 0 Translocation 0 LOC_Os05g09640 uncharacterized protein At4g06744 precursor, putative, expressed FN1382-S Chr5 7650001 7650002 0 0 Deletion 1 FN1382-S Chr5 8540221 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1382-S Chr6 10540144 Chr2 11628124 0 Translocation 0 LOC_Os02g19840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1382-S Chr6 10540144 Chr2 11628124 0 Translocation 0 LOC_Os06g18100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1382-S Chr6 18230346 Chr5 23802921 0 Translocation 0 LOC_Os05g40550 expressed protein FN1382-S Chr6 21235873 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr6 25598911 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1382-S Chr6 27643516 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1382-S Chr7 10311128 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr7 1174762 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1382-S Chr7 24679921 24679933 0 0 Deletion 12 FN1382-S Chr7 8659926 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr8 1433231 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g03130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1382-S Chr8 16754768 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr9 1067188 1067189 0 0 Deletion 1 FN1382-S Chr9 1307682 1307713 0 0 Deletion 31 FN1382-S Chr9 14150143 14150144 0 0 Deletion 1 FN1382-S Chr9 14198241 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1382-S Chr9 1577152 1577155 0 0 Deletion 3 LOC_Os09g03280 expressed protein FN1382-S Chr9 22397581 22397592 0 0 Deletion 11 FN1382-S Chr9 7907084 T-A 0 0 Single Base Substitution 0 INTERGENIC HET