FN1399-S Chr1 21742243 21742251 0 0 Deletion 8 FN1399-S Chr1 31070299 31070313 0 0 Deletion 14 LOC_Os01g54020 tRNA synthetase, putative, expressed FN1399-S Chr1 35770112 35770112 0 0 Insertion 2 FN1399-S Chr1 38967436 38967436 0 0 Insertion 1 FN1399-S Chr1 40617928 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN1399-S Chr10 10540010 10540011 0 0 Deletion 1 FN1399-S Chr10 12206886 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1399-S Chr10 18769924 18769934 0 0 Deletion 10 FN1399-S Chr10 258247 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr11 11294587 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr11 11871467 T-G 0 0 Single Base Substitution 0 INTRON HET FN1399-S Chr11 11879186 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25390 retrotransposon, putative, centromere-specific FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25410 transposon protein, putative, unclassified, expressed FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25420 hypothetical protein FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25430 retrotransposon protein, putative, unclassified FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25440 expressed protein FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25454 cytokinin-N-glucosyltransferase 1, putative, expressed FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25470 expressed protein FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25480 hypothetical protein FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25490 expressed protein FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25510 protein kinase domain containing protein, expressed FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25520 transposon protein, putative, unclassified, expressed FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25530 expressed protein FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25540 expressed protein FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25550 hypothetical protein FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25560 BHLH transcription factor, putative, expressed FN1399-S Chr11 14472001 14590000 0 0 Deletion 118000 LOC_Os11g25570 hypothetical protein FN1399-S Chr11 14581685 Chr1 34934433 0 Translocation 0 LOC_Os01g60400 retrotransposon protein, putative, Ty3-gypsy subclass FN1399-S Chr11 15714416 Chr9 6778100 0 Translocation 0 LOC_Os11g27329 OsSCP62 - Putative Serine Carboxypeptidase homologue, expressed FN1399-S Chr11 17817790 17817791 0 0 Deletion 1 FN1399-S Chr11 215275 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr11 4803269 4803269 0 0 Insertion 2 FN1399-S Chr12 14878197 14878199 0 0 Deletion 2 FN1399-S Chr12 24468498 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1399-S Chr12 27207326 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1399-S Chr12 4057235 6613635 0 0 Inversion 2556400 LOC_Os12g07990 protein kinase family protein, putative, expressed FN1399-S Chr12 4057235 6613635 0 0 Inversion 2556400 LOC_Os12g12080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1399-S Chr12 4500931 6613409 0 0 Inversion 2112478 LOC_Os12g08760 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed FN1399-S Chr12 4500931 6613409 0 0 Inversion 2112478 LOC_Os12g12080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1399-S Chr12 8798118 8798133 0 0 Deletion 15 FN1399-S Chr2 14618080 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr2 16566195 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr2 20681310 20681316 0 0 Deletion 6 FN1399-S Chr2 30277452 G-T 0 0 Single Base Substitution 0 INTRON HET FN1399-S Chr3 14970649 14970669 0 0 Deletion 20 FN1399-S Chr3 1565220 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1399-S Chr3 1565221 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1399-S Chr3 24204107 25103726 0 0 Inversion 899619 LOC_Os03g44580 DNA binding protein, putative, expressed FN1399-S Chr3 24204128 25103743 0 0 Inversion 899615 LOC_Os03g44580 DNA binding protein, putative, expressed FN1399-S Chr3 290288 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr3 6233761 6233763 0 0 Deletion 2 LOC_Os03g11900 transporter family protein, putative, expressed FN1399-S Chr3 6889308 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr3 8730874 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr4 16824835 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr4 17050928 17050934 0 0 Deletion 6 FN1399-S Chr4 17640450 17640450 0 0 Insertion 2 FN1399-S Chr4 19950274 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1399-S Chr4 22823321 22823321 0 0 Insertion 1 FN1399-S Chr4 34563303 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr4 6334994 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr5 10719932 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr5 18870550 G-C 0 0 Single Base Substitution 0 INTRON HET FN1399-S Chr5 19481814 19481837 0 0 Deletion 23 LOC_Os05g33220 AWPM-19-like membrane family protein, putative, expressed FN1399-S Chr5 7422762 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr5 7422781 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr6 11125884 11125886 0 0 Deletion 2 FN1399-S Chr6 1118471 1118472 0 0 Deletion 1 FN1399-S Chr6 15933359 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr6 1814138 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr6 21755037 21755038 0 0 Deletion 1 FN1399-S Chr6 25285806 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr6 28057217 A-G 0 0 Single Base Substitution 0 INTRON HET FN1399-S Chr6 7282635 7282636 0 0 Deletion 1 LOC_Os06g13240 BURP domain containing protein, expressed FN1399-S Chr7 23463213 23463214 0 0 Deletion 1 FN1399-S Chr7 27309783 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g45750 retrotransposon protein, putative, unclassified, expressed FN1399-S Chr7 28947501 28947503 0 0 Deletion 2 FN1399-S Chr7 5596912 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1399-S Chr7 6894587 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1399-S Chr8 14127519 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1399-S Chr8 1662408 1662409 0 0 Deletion 1 FN1399-S Chr8 18259694 18259694 0 0 Insertion 25 FN1399-S Chr8 22091462 T-A 0 0 Single Base Substitution 0 INTRON HET FN1399-S Chr9 15551430 15551433 0 0 Deletion 3