FN1409-S Chr1 13998737 13998738 0 0 Deletion 1 FN1409-S Chr1 15977607 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1409-S Chr1 39605451 39605462 0 0 Deletion 11 LOC_Os01g68120 DCL3, putative, expressed FN1409-S Chr1 41497065 T-C 0 0 Single Base Substitution 0 INTRON HET FN1409-S Chr1 4589508 4589520 0 0 Deletion 12 FN1409-S Chr1 532506 532506 0 0 Insertion 1 FN1409-S Chr1 905152 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1409-S Chr1 9757240 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr10 14354957 14354957 0 0 Insertion 1 FN1409-S Chr10 21302523 G-A 0 0 Single Base Substitution 0 INTRON HET FN1409-S Chr10 4452848 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr10 5256035 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr10 5256037 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr10 5367003 5367004 0 0 Deletion 1 FN1409-S Chr11 13585855 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1409-S Chr11 19518550 C-T 0 0 Single Base Substitution 0 INTRON HET FN1409-S Chr12 18047461 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g30120 retrotransposon protein, putative, unclassified, expressed FN1409-S Chr12 22272343 T-G 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os12g36380 retrotransposon protein, putative, unclassified FN1409-S Chr12 3384776 3384777 0 0 Deletion 1 LOC_Os12g06930 expressed protein FN1409-S Chr12 3864335 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1409-S Chr12 5011582 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr2 26107585 26107596 0 0 Deletion 11 FN1409-S Chr2 26914955 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr2 33006938 33006940 0 0 Deletion 2 FN1409-S Chr2 33545880 33545881 0 0 Deletion 1 FN1409-S Chr3 18877536 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr3 21030836 21030844 0 0 Deletion 8 LOC_Os03g37864 expressed protein FN1409-S Chr3 31852736 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr3 3519662 3519663 0 0 Deletion 1 FN1409-S Chr3 3641551 T-A 0 0 Single Base Substitution 0 INTRON HET FN1409-S Chr3 3647572 G-A 0 0 Single Base Substitution 0 INTRON HET FN1409-S Chr3 5500885 5500885 0 0 Insertion 9 FN1409-S Chr4 21031129 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1409-S Chr4 34605693 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1409-S Chr5 10266186 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g17840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1409-S Chr5 1137413 1137426 0 0 Deletion 13 FN1409-S Chr5 2120999 2242580 0 0 Inversion 121581 FN1409-S Chr5 2121001 2180000 0 0 Deletion 59000 LOC_Os05g04570 F-box family protein, putative, expressed FN1409-S Chr5 2121001 2180000 0 0 Deletion 59000 LOC_Os05g04584 transferase family protein, putative, expressed FN1409-S Chr5 2121001 2180000 0 0 Deletion 59000 LOC_Os05g04600 ABC transmembrane transporter domain containing protein, expressed FN1409-S Chr5 2121001 2180000 0 0 Deletion 59000 LOC_Os05g04610 ABC transporter, ATP-binding protein, putative, expressed FN1409-S Chr5 2121001 2180000 0 0 Deletion 59000 LOC_Os05g04620 expressed protein FN1409-S Chr5 2121001 2180000 0 0 Deletion 59000 LOC_Os05g04630 retrotransposon protein, putative, SINE subclass, expressed FN1409-S Chr5 2121001 2180000 0 0 Deletion 59000 LOC_Os05g04640 WRKY5, expressed FN1409-S Chr5 2180190 2242584 0 0 Inversion 62394 LOC_Os05g04640 WRKY5, expressed FN1409-S Chr5 3799747 T-A 0 0 Single Base Substitution 0 INTRON HET FN1409-S Chr5 9100841 9100856 0 0 Deletion 15 FN1409-S Chr6 11084304 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1409-S Chr6 14107534 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1409-S Chr6 16026663 C-T 0 0 Single Base Substitution 0 INTRON HET FN1409-S Chr6 20206618 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1409-S Chr6 20720010 20720011 0 0 Deletion 1 FN1409-S Chr6 24744246 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1409-S Chr6 25746620 25746622 0 0 Deletion 2 FN1409-S Chr6 4370370 T-A 0 0 Single Base Substitution 0 STOP_LOST HET LOC_Os06g08730 expressed protein FN1409-S Chr6 9673495 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g16750 expressed protein FN1409-S Chr6 9690072 9690073 0 0 Deletion 1 FN1409-S Chr7 10907825 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g18440 retrotransposon protein, putative, Ty3-gypsy subclass FN1409-S Chr7 17765574 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr7 18350620 A-C 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os07g30980 uvrD/REP helicase family protein, putative, expressed FN1409-S Chr7 19968182 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr7 19968188 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr7 2442184 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr7 28088758 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g47010 transposon protein, putative, unclassified, expressed FN1409-S Chr7 9121314 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr8 10012863 10584095 0 0 Inversion 571232 LOC_Os08g16380 transposon protein, putative, CACTA, En/Spm sub-class FN1409-S Chr8 1456066 1456070 0 0 Deletion 4 LOC_Os08g03160 lectin-like receptor kinase 1, putative, expressed FN1409-S Chr8 14974549 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1409-S Chr8 16269066 Chr4 4978107 0 Translocation 0 LOC_Os04g09360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1409-S Chr8 21207571 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1409-S Chr8 27723449 27723449 0 0 Insertion 2 FN1409-S Chr8 7542914 7542922 0 0 Deletion 8 FN1409-S Chr9 10076755 G-A 0 0 Single Base Substitution 0 INTRON HET FN1409-S Chr9 12859474 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1409-S Chr9 16450303 A-G 0 0 Single Base Substitution 0 INTERGENIC HET