FN1416-S Chr1 13423081 13423082 0 0 Deletion 1 LOC_Os01g23850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1416-S Chr1 13853004 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr1 22478352 22478352 0 0 Insertion 1 FN1416-S Chr1 23283123 23283124 0 0 Deletion 1 FN1416-S Chr1 23714329 23714332 0 0 Deletion 3 FN1416-S Chr1 25070611 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr1 2665738 C-A 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr1 26715616 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1416-S Chr1 27430963 27430964 0 0 Deletion 1 FN1416-S Chr1 32161313 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1416-S Chr10 12496199 12499837 0 0 Deletion 3638 LOC_Os10g24390 expressed protein FN1416-S Chr10 1265078 1265080 0 0 Deletion 2 FN1416-S Chr10 13488108 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g26040 retrotransposon protein, putative, unclassified, expressed FN1416-S Chr10 2027730 A-C 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr10 8921347 9502564 0 0 Inversion 581217 LOC_Os10g17650 Os10bglu34 - beta-glucosidase homologue, similar to Os3bglu6, expressed FN1416-S Chr10 8921347 9502564 0 0 Inversion 581217 LOC_Os10g18700 expressed protein FN1416-S Chr10 8921391 Chr5 8891431 0 Translocation 0 LOC_Os05g15750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1416-S Chr10 8921391 Chr5 8891431 0 Translocation 0 LOC_Os10g17650 Os10bglu34 - beta-glucosidase homologue, similar to Os3bglu6, expressed FN1416-S Chr10 8921475 Chr7 15419693 0 Translocation 0 LOC_Os10g17650 Os10bglu34 - beta-glucosidase homologue, similar to Os3bglu6, expressed FN1416-S Chr10 9868271 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr10 9880055 G-A 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr10 9880056 C-A 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr11 15180057 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1416-S Chr11 21844231 21844242 0 0 Deletion 11 FN1416-S Chr11 23275716 23275738 0 0 Deletion 22 FN1416-S Chr11 28161209 G-A 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr12 6728873 6728873 0 0 Insertion 4 FN1416-S Chr12 9199365 C-A 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr12 942621 C-T 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr2 1056214 C-T 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr2 26468591 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1416-S Chr2 27148179 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr2 5449446 5449446 0 0 Insertion 3 FN1416-S Chr3 13432396 13432399 0 0 Deletion 3 FN1416-S Chr3 13808699 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr3 13839887 13839947 0 0 Deletion 60 FN1416-S Chr3 1413136 1413137 0 0 Deletion 1 FN1416-S Chr3 15681757 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr3 1628850 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN1416-S Chr3 28685436 28685439 0 0 Deletion 3 FN1416-S Chr3 30494949 30494959 0 0 Deletion 10 FN1416-S Chr3 31991310 31991317 0 0 Deletion 7 LOC_Os03g56140 homeobox protein rough sheath 1, putative, expressed FN1416-S Chr3 36197599 36197600 0 0 Deletion 1 FN1416-S Chr3 9592824 9592841 0 0 Deletion 17 FN1416-S Chr4 10472705 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr4 1280346 G-T 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr4 16958490 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr4 1722598 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr4 19170232 19590961 0 0 Inversion 420729 LOC_Os04g32010 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed FN1416-S Chr4 2246198 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr4 24915303 A-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN1416-S Chr4 32616754 32616764 0 0 Deletion 10 LOC_Os04g54840 DNA-directed RNA polymerase subunit, putative, expressed FN1416-S Chr4 3952441 3952441 0 0 Insertion 5 FN1416-S Chr4 5707877 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr5 22990619 22990630 0 0 Deletion 11 FN1416-S Chr5 24229829 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr5 27492644 27492646 0 0 Deletion 2 FN1416-S Chr5 822514 822514 0 0 Insertion 3 LOC_Os05g02435 expressed protein FN1416-S Chr6 14631535 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1416-S Chr6 16917794 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1416-S Chr6 19850157 19850163 0 0 Deletion 6 FN1416-S Chr6 29663981 T-C 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr6 4421592 4421592 0 0 Insertion 2 FN1416-S Chr6 9927539 9927539 0 0 Insertion 1 FN1416-S Chr7 12371990 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr7 15419553 15419680 0 0 Deletion 127 FN1416-S Chr7 171031 T-A 0 0 Single Base Substitution 0 INTRON HET FN1416-S Chr7 18149688 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g30670 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed FN1416-S Chr7 24144354 24144355 0 0 Deletion 1 FN1416-S Chr8 1041815 1041834 0 0 Deletion 19 FN1416-S Chr8 11749788 11749790 0 0 Deletion 2 FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35700 Leucine Rich Repeat family protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35710 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35720 retrotransposon protein, putative, unclassified, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35730 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35740 12-oxophytodienoate reductase, putative, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35750 Cupin domain containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35760 Cupin domain containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35770 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35790 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35800 retrotransposon protein, putative, unclassified, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35810 retrotransposon protein, putative, unclassified, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35840 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35850 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35860 cytokinin dehydrogenase precursor, putative, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35870 OsFBL48 - F-box domain and LRR containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35880 OsFBX294 - F-box domain containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35900 OsFBL49 - F-box domain and LRR containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35910 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35920 transposon protein, putative, Pong sub-class, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35930 OsFBL50 - F-box domain and LRR containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35939 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35948 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35960 OsFBD14 - F-box and FBD domain containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35970 transposon protein, putative, Mutator sub-class, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35980 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g35990 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g36000 OsFBL51 - F-box domain and LRR containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g36010 OsFBX295 - F-box domain containing protein, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g36020 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g36030 plant viral response family protein, putative, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g36040 plant viral response family protein, putative, expressed FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g36050 expressed protein FN1416-S Chr8 22522001 22728000 0 0 Deletion 206000 LOC_Os08g36060 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36090 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36100 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36110 ZOS8-06 - C2H2 zinc finger protein, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36120 retrotransposon protein, putative, unclassified, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36140 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36150 activator of 90 kDa heat shock protein ATPase homolog, putative, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36160 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36170 cytokinesis negative regulator RCP1, putative, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36179 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36188 transposon protein, putative, Mariner sub-class, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36220 homeobox associated leucine zipper, putative, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36230 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36240 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36250 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36270 conserved hypothetical protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36290 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36300 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36310 cytochrome P450, putative, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36320 decarboxylase, putative, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36330 POLE2B - Putative DNA polymerase epsilon complex subunit, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36340 potassium transporter, putative, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36350 hypothetical protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36360 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36370 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36380 expressed protein FN1416-S Chr8 22739001 22972000 0 0 Deletion 233000 LOC_Os08g36390 ZOS8-07 - C2H2 zinc finger protein, expressed FN1416-S Chr8 7038836 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1416-S Chr8 7272565 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1416-S Chr9 16109809 16109817 0 0 Deletion 8 FN1416-S Chr9 20133590 20133590 0 0 Insertion 5 FN1416-S Chr9 2452355 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO