FN1423-S Chr1 16141241 16141246 0 0 Deletion 5 FN1423-S Chr1 21847884 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1423-S Chr1 22265823 22265824 0 0 Deletion 1 FN1423-S Chr1 23742726 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr1 24921674 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr1 25001002 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr1 29717765 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr1 30318159 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr1 30450708 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr1 32095660 T-A 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr1 32172605 41977140 0 0 Inversion 9804535 LOC_Os01g55870 chorismate mutase, chloroplast precursor, putative, expressed FN1423-S Chr1 32172605 41977140 0 0 Inversion 9804535 LOC_Os01g72370 helix-loop-helix DNA-binding domain containing protein, expressed FN1423-S Chr1 36218892 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr1 37876072 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr1 37876075 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr1 40857059 40857069 0 0 Deletion 10 LOC_Os01g70540 retrotransposon protein, putative, unclassified, expressed FN1423-S Chr1 5985911 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr10 14044873 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr10 21595770 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g40290 pectinacetylesterase domain containing protein, expressed FN1423-S Chr10 8883050 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g17590 retrotransposon protein, putative, unclassified, expressed FN1423-S Chr10 917972 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr10 917973 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr11 13220820 Chr5 29713157 0 Translocation 0 FN1423-S Chr11 15618770 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr11 18233913 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr11 19474888 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr11 22230163 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g37660 vegetative storage protein, putative, expressed FN1423-S Chr11 23704834 Chr6 6173489 0 Translocation 0 LOC_Os06g11640 serine/threonine-protein phosphatase 2A activator 2, putative, expressed FN1423-S Chr11 23704841 Chr6 6173498 0 Translocation 0 LOC_Os06g11640 serine/threonine-protein phosphatase 2A activator 2, putative, expressed FN1423-S Chr11 23882804 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1423-S Chr11 26824125 G-C 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr11 26996234 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr11 27627847 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr11 5765098 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr11 7969526 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr12 14914206 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr12 15075812 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr12 15500269 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr12 17697037 G-T 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr12 17697040 G-T 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr12 21494753 Chr11 17511063 0 Translocation 0 LOC_Os12g35360 vesicle tethering family protein, putative, expressed FN1423-S Chr12 22624612 22624627 0 0 Deletion 15 FN1423-S Chr12 2322097 Chr11 5019906 0 Translocation 0 FN1423-S Chr12 23626467 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr12 24310352 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr12 2486570 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr12 26063493 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr12 7239456 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr2 10299166 G-A 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr2 11066022 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr2 11658179 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr2 14545644 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr2 14986451 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr2 25748882 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr2 25748883 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44830 hypothetical protein FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44840 expressed protein FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44850 GDSL-like lipase/acylhydrolase, putative, expressed FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44860 GDSL-like lipase/acylhydrolase, putative, expressed FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44870 dehydrin, putative, expressed FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44880 expressed protein FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44890 RNA-binding region RNP-1, putative, expressed FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44900 expressed protein FN1423-S Chr2 27141001 27209000 0 0 Deletion 68000 LOC_Os02g44910 transmembrane protein, putative, expressed FN1423-S Chr2 34717389 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr2 4072992 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 10531968 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 11092757 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 13962190 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr3 14500839 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 1754340 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr3 17557923 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 18077755 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 22032938 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 29118687 G-A 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr3 31490524 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1423-S Chr3 33123128 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr3 34534476 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 35945262 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr3 4232690 G-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os03g08310 ZIM domain containing protein, putative, expressed FN1423-S Chr3 6811747 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr3 9055667 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr4 11835904 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr4 2251212 G-T 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr4 26962594 26962604 0 0 Deletion 10 LOC_Os04g45580 kinesin motor domain containing protein, expressed FN1423-S Chr4 28438484 28438485 0 0 Deletion 1 FN1423-S Chr4 6361591 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1423-S Chr5 14554857 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr5 1799167 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr5 19591401 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr5 20867876 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g35130 retrotransposon protein, putative, unclassified FN1423-S Chr5 20980742 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr5 21828771 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr5 22688925 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr5 26614646 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr5 28477820 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr5 6405161 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr5 7908379 7908380 0 0 Deletion 1 FN1423-S Chr5 815971 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr5 815979 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr6 12239577 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr6 12239578 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr6 13233037 13233046 0 0 Deletion 9 LOC_Os06g22750 retrotransposon protein, putative, unclassified, expressed FN1423-S Chr6 13718718 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr6 21893671 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr6 23865116 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr6 26916819 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g44570 retrotransposon protein, putative, unclassified, expressed FN1423-S Chr6 29091126 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr6 3572932 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr6 6181788 6181789 0 0 Deletion 1 FN1423-S Chr6 6181979 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr6 6523523 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr7 10281568 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 11040415 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr7 11048081 11048083 0 0 Deletion 2 FN1423-S Chr7 11048634 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 11048637 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 11048638 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 11222735 Chr4 17934859 0 Translocation 0 LOC_Os04g30040 jacalin-like lectin domain containing protein, expressed FN1423-S Chr7 11222735 Chr4 17934859 0 Translocation 0 LOC_Os07g18944 expressed protein FN1423-S Chr7 16636548 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 17502061 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr7 17547318 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 19815076 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr7 25760216 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 29683820 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 3798393 3798404 0 0 Deletion 11 LOC_Os07g07580 ROOT HAIRLESS 1, putative, expressed FN1423-S Chr7 3805511 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN1423-S Chr7 7054926 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr7 9423356 9423359 0 0 Deletion 3 FN1423-S Chr8 22208251 22208252 0 0 Deletion 1 FN1423-S Chr8 23869266 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr8 24544420 G-A 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr8 26520131 C-G 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr8 6031120 6031126 0 0 Deletion 6 FN1423-S Chr8 6089459 6528946 0 0 Inversion 439487 FN1423-S Chr8 8248578 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr8 843792 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1423-S Chr8 8557158 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g14280 retrotransposon protein, putative, unclassified, expressed FN1423-S Chr9 11095881 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1423-S Chr9 11095882 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g18100 retrotransposon protein, putative, Ty3-gypsy subclass FN1423-S Chr9 1166028 C-A 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr9 12983218 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr9 15381501 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1423-S Chr9 17627418 C-G 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr9 18738037 G-T 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr9 1963069 C-T 0 0 Single Base Substitution 0 INTRON HET FN1423-S Chr9 4517496 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g08640 retrotransposon protein, putative, unclassified, expressed FN1423-S Chr9 4825158 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g09050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1423-S Chr9 5029682 5029682 0 0 Insertion 2 FN1423-S Chr9 5167579 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os09g09580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1423-S Chr9 9709317 A-G 0 0 Single Base Substitution 0 INTERGENIC HET