FN1443-S Chr1 22271234 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr1 24313248 24313250 0 0 Deletion 2 FN1443-S Chr1 25651825 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr1 29094342 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g50650 retrotransposon protein, putative, unclassified, expressed FN1443-S Chr1 40554645 40554646 0 0 Deletion 1 LOC_Os01g70060 protein of unknown function, DUF618 domain containing protein, expressed FN1443-S Chr1 42135984 42135985 0 0 Deletion 1 FN1443-S Chr1 4368463 4368465 0 0 Deletion 2 FN1443-S Chr1 9472461 9472464 0 0 Deletion 3 FN1443-S Chr10 12443024 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g24290 retrotransposon protein, putative, unclassified, expressed FN1443-S Chr10 14550121 14550125 0 0 Deletion 4 FN1443-S Chr10 17240761 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1443-S Chr10 17894271 17894272 0 0 Deletion 1 FN1443-S Chr10 18380439 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr10 21013928 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr10 21013929 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr10 8388355 T-A 0 0 Single Base Substitution 0 INTRON HET FN1443-S Chr11 14114199 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1443-S Chr11 28829005 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr11 3250052 Chr3 24406169 0 Translocation 0 FN1443-S Chr11 714465 714465 0 0 Insertion 1 FN1443-S Chr11 7762528 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr12 10179181 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr12 12739556 12739557 0 0 Deletion 1 FN1443-S Chr12 13109040 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr12 1422485 1422485 0 0 Insertion 1 FN1443-S Chr12 17274208 17274215 0 0 Deletion 7 FN1443-S Chr12 18067029 18067035 0 0 Deletion 6 FN1443-S Chr12 24540561 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr12 2611697 2611697 0 0 Insertion 4 FN1443-S Chr12 6950858 6950860 0 0 Deletion 2 FN1443-S Chr2 10438804 10438811 0 0 Deletion 7 LOC_Os02g17990 Leucine Rich Repeat family protein, expressed FN1443-S Chr2 23501150 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40860 CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40870 phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40880 ribosomal protein L14, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40890 GLTP domain containing protein, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40900 RNA recognition motif containing protein, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40910 hypothetical protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40930 transposon protein, putative, CACTA, En/Spm sub-class FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40940 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g40950 transposon protein, putative, unclassified, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41450 no apical meristem protein, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41460 DUF640 domain containing protein, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41470 tRNA synthetases class II domain containing protein, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41480 OsWAK12 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41490 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41500 OsWAK13 - OsWAK receptor-like protein kinase, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41510 MYB family transcription factor, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41520 glycosyl transferase 8 domain containing protein, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41530 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41540 retrotransposon protein, putative, unclassified, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41550 FAD binding domain of DNA photolyase domain containing protein, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41560 pentatricopeptide, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41570 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41580 CAMK_CAMK_like.14 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41590 kinase, pfkB family, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41610 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41620 hypothetical protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41630 phenylalanine ammonia-lyase, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41640 transposon protein, putative, unclassified, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41650 phenylalanine ammonia-lyase, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41670 phenylalanine ammonia-lyase, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41680 phenylalanine ammonia-lyase, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41690 retrotransposon protein, putative, unclassified, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41696 retrotransposon protein, putative, unclassified, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41702 retrotransposon protein, putative, unclassified, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41710 cyclic nucleotide-gated ion channel, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41720 transposon protein, putative, unclassified, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41730 retrotransposon protein, putative, Ty3-gypsy subclass FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41750 transposon protein, putative, unclassified FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41760 NB-ARC domain containing protein, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41770 uncharacterized protein PA4923, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41780 transporter-related, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41790 transposon protein, putative, Ac/Ds sub-class FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41800 auxin response factor, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41810 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41820 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41830 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41840 DUF584 domain containing protein, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41850 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41860 aquaporin protein, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41870 transposon protein, putative, unclassified, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41880 expressed protein FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41890 phytosulfokine receptor precursor, putative, expressed FN1443-S Chr2 24767001 25188000 0 0 Deletion 421000 LOC_Os02g41900 expressed protein FN1443-S Chr2 26710475 C-A 0 0 Single Base Substitution 0 INTRON HET FN1443-S Chr2 29612268 T-A 0 0 Single Base Substitution 0 INTRON HET FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52590 xyloglucan fucosyltransferase, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52610 xyloglucan fucosyltransferase, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52620 expressed protein FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52630 xyloglucan fucosyltransferase, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52640 xyloglucan fucosyltransferase, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52650 chlorophyll A-B binding protein, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52660 expressed protein FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52670 AP2 domain containing protein, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52680 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52700 alpha-amylase precursor, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52710 alpha-amylase precursor, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52720 peroxisomal multifunctional enzyme type 2, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52730 ferredoxin--nitrite reductase, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52744 DCL, chloroplast precursor, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52760 hypothetical protein FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52770 expressed protein FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52780 bZIP transcription factor, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52790 PB1 domain containing protein, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52800 OsMan03 - Endo-Beta-Mannanase, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52810 remorin C-terminal domain containing protein, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52820 cold-induced protein, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52830 lipase, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52840 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52850 receptor-like protein kinase like protein, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52860 phosphate carrier protein, mitochondrial precursor, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52870 zinc finger, C3HC4 type domain containing protein, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52880 ybaK/prolyl-tRNA synthetase family protein, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52890 hypothetical protein FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52900 glutaredoxin 2, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52910 zinc finger protein, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52920 emp24/gp25L/p24 family protein, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52930 integral membrane protein DUF6 containing protein, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52934 expressed protein FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52940 soluble inorganic pyrophosphatase, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52950 expressed protein FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52960 PHD-finger domain containing protein, putative, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1443-S Chr2 32178360 32419952 0 0 Deletion 241592 LOC_Os02g52990 OsSAUR12 - Auxin-responsive SAUR gene family member, expressed FN1443-S Chr2 33733056 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g55070 expressed protein FN1443-S Chr2 3462559 3462563 0 0 Deletion 4 LOC_Os02g06870 retrotransposon protein, putative, unclassified, expressed FN1443-S Chr2 7047637 7047640 0 0 Deletion 3 FN1443-S Chr2 9261449 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g16270 xa1, putative, expressed FN1443-S Chr3 16746909 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr3 16746910 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr4 19003237 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1443-S Chr4 26745647 26745654 0 0 Deletion 7 FN1443-S Chr5 12000024 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr5 18616703 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr5 21761139 21761140 0 0 Deletion 1 FN1443-S Chr5 24244843 24244846 0 0 Deletion 3 LOC_Os05g41400 indole-3-acetate beta-glucosyltransferase, putative, expressed FN1443-S Chr5 27860890 T-G 0 0 Single Base Substitution 0 INTRON HET FN1443-S Chr5 28881468 28881470 0 0 Deletion 2 FN1443-S Chr5 7679900 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr5 9995151 9995155 0 0 Deletion 4 LOC_Os05g17410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1443-S Chr6 13573246 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g23250 transposon protein, putative, CACTA, En/Spm sub-class FN1443-S Chr6 15157477 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr6 15204492 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr6 15642525 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr6 16965851 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr6 23152789 23152792 0 0 Deletion 3 FN1443-S Chr6 23767627 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr6 9367033 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1443-S Chr6 9445914 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr6 9445915 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr7 13669211 C-T 0 0 Single Base Substitution 0 INTRON HET FN1443-S Chr7 16443538 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1443-S Chr7 26464165 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr7 27947942 27947943 0 0 Deletion 1 LOC_Os07g46760 RNA recognition motif containing protein, putative, expressed FN1443-S Chr7 8718991 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1443-S Chr8 22013514 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr8 26261737 C-T 0 0 Single Base Substitution 0 INTRON HET FN1443-S Chr8 5477130 5489206 0 0 Deletion 12076 LOC_Os08g09450 OsFBL41 - F-box domain and LRR containing protein, expressed FN1443-S Chr8 5477130 5489206 0 0 Deletion 12076 LOC_Os08g09460 OsFBX267 - F-box domain containing protein, expressed FN1443-S Chr8 5477130 5489206 0 0 Deletion 12076 LOC_Os08g09470 expressed protein FN1443-S Chr9 10313405 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1443-S Chr9 14338957 14338957 0 0 Insertion 2 FN1443-S Chr9 1558067 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1443-S Chr9 17891330 17891330 0 0 Insertion 1 FN1443-S Chr9 22327743 22327748 0 0 Deletion 5 LOC_Os09g38870 expressed protein FN1443-S Chr9 3899692 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g07730 expressed protein FN1443-S Chr9 6735634 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO