FN1459-S Chr1 14377199 14377207 0 0 Deletion 8 FN1459-S Chr1 23745436 23745436 0 0 Insertion 4 FN1459-S Chr1 27296844 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr1 35633238 35633246 0 0 Deletion 8 FN1459-S Chr1 37801579 37801580 0 0 Deletion 1 LOC_Os01g65120 peptide transporter, putative, expressed FN1459-S Chr1 4876397 4876397 0 0 Insertion 3 FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24470 retrotransposon, putative, centromere-specific, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24480 retrotransposon, putative, centromere-specific, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24490 retrotransposon protein, putative, unclassified FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24500 expressed protein FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24520 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24530 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24590 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24610 transposon protein, putative, unclassified FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24630 transposon protein, putative, unclassified FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24640 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24650 retrotransposon, putative, centromere-specific, expressed FN1459-S Chr10 12549001 12676000 0 0 Deletion 127000 LOC_Os10g24660 retrotransposon protein, putative, unclassified FN1459-S Chr10 12981755 12981784 0 0 Deletion 29 FN1459-S Chr10 21467441 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr11 10895601 10895601 0 0 Insertion 1 FN1459-S Chr11 12954100 12954109 0 0 Deletion 9 FN1459-S Chr11 13278620 13278621 0 0 Deletion 1 FN1459-S Chr11 9306104 10200302 0 0 Inversion 894198 LOC_Os11g18120 retrotransposon protein, putative, LINE subclass, expressed FN1459-S Chr11 9306141 10200289 0 0 Inversion 894148 LOC_Os11g18120 retrotransposon protein, putative, LINE subclass, expressed FN1459-S Chr11 9412195 9412196 0 0 Deletion 1 FN1459-S Chr12 14260677 C-G 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g24870 SWIM zinc finger family protein, putative, expressed FN1459-S Chr12 16530901 16530911 0 0 Deletion 10 FN1459-S Chr12 19372223 19372228 0 0 Deletion 5 LOC_Os12g32120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1459-S Chr12 25951762 25951780 0 0 Deletion 18 FN1459-S Chr12 6624869 6624869 0 0 Insertion 2 FN1459-S Chr2 10575966 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g18210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr2 15901371 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr2 2633762 2633764 0 0 Deletion 2 FN1459-S Chr2 30606806 30606808 0 0 Deletion 2 FN1459-S Chr3 1163150 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1459-S Chr3 13121495 13121495 0 0 Insertion 1 FN1459-S Chr3 13167563 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN1459-S Chr3 2930333 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN1459-S Chr3 3085157 3085158 0 0 Deletion 1 FN1459-S Chr3 32604039 32604039 0 0 Insertion 1 FN1459-S Chr3 34235510 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g60190 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN1459-S Chr3 34549673 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1459-S Chr3 34714130 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN1459-S Chr3 4887846 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr4 11131199 11131205 0 0 Deletion 6 LOC_Os04g19960 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr4 12970453 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr4 1398636 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g03290 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr4 16756311 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1459-S Chr4 20570450 20570459 0 0 Deletion 9 LOC_Os04g33980 transposon protein, putative, Mutator sub-class, expressed FN1459-S Chr4 31218809 31218819 0 0 Deletion 10 FN1459-S Chr4 4901618 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr4 8311258 8311259 0 0 Deletion 1 FN1459-S Chr4 9750169 A-G 0 0 Single Base Substitution 0 INTRON HET FN1459-S Chr5 14576491 14576491 0 0 Insertion 1 FN1459-S Chr5 18883147 A-G 0 0 Single Base Substitution 0 INTRON HET FN1459-S Chr5 21071461 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1459-S Chr5 24448941 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1459-S Chr5 5379369 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr5 5637477 5637477 0 0 Insertion 2 FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15820 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15850 glycosyl hydrolase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15860 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15870 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15880 glycosyl hydrolase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15890 SNF2 family N-terminal domain containing protein, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15900 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15910 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15920 glycosyl hydrolase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15930 transposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15940 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15950 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15960 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16000 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16010 retrotransposon protein, putative, LINE subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16020 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16030 hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16040 hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16054 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16060 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16080 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16090 hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16100 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16110 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16120 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16130 transposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16140 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16160 malonyl-CoA isoflavone 7-O-glucoside-6-O-malonyltransferase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16170 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16180 NB-ARC domain containing protein, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16200 blight resistance protein T118, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16210 glycine-rich protein, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16220 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16230 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16240 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16250 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16280 transposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16290 transposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16300 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16315 translation initiation factor IF-2, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16320 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16340 transposon protein, putative, CACTA, En/Spm sub-class FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16360 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16370 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16380 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16395 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16410 retrotransposon, putative, centromere-specific, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16420 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16430 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16440 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16450 hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16460 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16470 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16480 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16490 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16500 transposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16510 retrotransposon, putative, centromere-specific FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16520 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16530 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16540 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16550 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16560 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16570 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16600 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16610 transposon protein, putative, CACTA, En/Spm sub-class FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16620 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16630 thioredoxin domain-containing protein 9, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16640 DUF630/DUF632 domains containing protein, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16660 WD domain, G-beta repeat domain containing protein, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16664 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16670 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16700 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16710 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16740 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16750 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16760 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16780 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16800 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16810 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16824 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16840 hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16860 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16880 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16889 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16900 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16920 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16930 protein kinase domain containing protein, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16940 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16950 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16970 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16980 terpene synthase 8, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g16990 hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17010 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17020 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17060 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17070 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17080 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17090 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17110 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17170 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17180 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17190 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17200 transposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17210 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17220 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17230 conserved hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17240 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17250 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17280 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17290 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17300 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17310 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17330 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17340 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17350 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17380 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17390 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17400 retrotransposon, putative, centromere-specific FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17440 transposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17450 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17460 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17490 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17500 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17510 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17520 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17530 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17540 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17550 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17560 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17580 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17590 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17604 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17640 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17650 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17670 retrotransposon protein, putative, Ty1-copia subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17680 conserved hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17690 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17700 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17710 hypothetical protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17720 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17730 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17740 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17750 retrotransposon protein, putative, Ty1-copia subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17760 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17790 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17800 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17810 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17820 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17830 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17849 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17860 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17870 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17880 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17890 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17900 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17920 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17930 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17940 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17950 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17970 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17980 retrotransposon protein, putative, unclassified, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g17990 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18000 retrotransposon protein, putative, LINE subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18020 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18030 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18050 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18060 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18080 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18090 SHR5-receptor-like kinase, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18120 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18130 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18140 retrotransposon, putative, centromere-specific FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18150 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18160 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18170 retrotransposon, putative, centromere-specific, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18180 retrotransposon, putative, centromere-specific, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18220 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18250 retrotransposon, putative, centromere-specific FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18260 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18270 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18274 expressed protein FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18280 kelch domain containing protein, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18294 SEC14 cytosolic factor family protein, putative, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18310 retrotransposon protein, putative, Ty3-gypsy subclass FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18320 transposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18350 retrotransposon, putative, centromere-specific, expressed FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18360 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18370 retrotransposon protein, putative, unclassified FN1459-S Chr5 8935001 10608000 0 0 Deletion 1673000 LOC_Os05g18380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr6 12807343 12807345 0 0 Deletion 2 FN1459-S Chr6 7476166 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr7 11024565 11024576 0 0 Deletion 11 FN1459-S Chr7 15789158 15789159 0 0 Deletion 1 LOC_Os07g27190 retrotransposon protein, putative, unclassified FN1459-S Chr7 18512464 18512472 0 0 Deletion 8 FN1459-S Chr7 2891503 2891504 0 0 Deletion 1 FN1459-S Chr7 8984896 8984897 0 0 Deletion 1 FN1459-S Chr7 8993736 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1459-S Chr7 9620026 10530460 0 0 Inversion 910434 LOC_Os07g16420 OsFBX232 - F-box domain containing protein, expressed FN1459-S Chr7 9620026 10530460 0 0 Inversion 910434 LOC_Os07g17800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1459-S Chr8 12457938 12457954 0 0 Deletion 16 LOC_Os08g20730 peroxidase precursor, putative, expressed FN1459-S Chr8 6182936 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1459-S Chr9 5395808 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os09g09930 heavy metal transport/detoxification protein, putative, expressed FN1459-S Chr9 8270346 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1459-S Chr9 8979811 8979811 0 0 Insertion 12