FN1488-S Chr1 21742558 C-T 0 0 Single Base Substitution 0 INTRON HET FN1488-S Chr1 32220399 32220401 0 0 Deletion 2 FN1488-S Chr1 32952566 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1488-S Chr1 39497259 39497262 0 0 Deletion 3 FN1488-S Chr1 4240252 4240252 0 0 Insertion 4 FN1488-S Chr1 42527690 42532115 0 0 Deletion 4425 LOC_Os01g73380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1488-S Chr1 4810002 4810002 0 0 Insertion 1 FN1488-S Chr10 11351597 G-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN1488-S Chr10 2008946 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr10 2285838 2287809 0 0 Deletion 1971 FN1488-S Chr10 5407042 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g09970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1488-S Chr11 10845900 C-T 0 0 Single Base Substitution 0 INTRON Homo FN1488-S Chr11 13608666 13608666 0 0 Insertion 1 FN1488-S Chr11 14054829 14054830 0 0 Deletion 1 FN1488-S Chr11 1483556 1483557 0 0 Deletion 1 FN1488-S Chr11 1498369 1498370 0 0 Deletion 1 FN1488-S Chr11 16402986 16402988 0 0 Deletion 2 FN1488-S Chr11 18465026 18465026 0 0 Insertion 43 LOC_Os11g31590 armadillo, putative, expressed FN1488-S Chr11 26394514 26394515 0 0 Deletion 1 FN1488-S Chr11 26590995 26590996 0 0 Deletion 1 FN1488-S Chr11 3793275 3793299 0 0 Deletion 24 FN1488-S Chr11 4321471 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g08230 DEFL46 - Defensin and Defensin-like DEFL family, expressed FN1488-S Chr11 5476122 5476146 0 0 Deletion 24 FN1488-S Chr12 20268940 20268942 0 0 Deletion 2 FN1488-S Chr12 20353570 20353583 0 0 Deletion 13 FN1488-S Chr12 21300383 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr12 23735696 23735729 0 0 Deletion 33 FN1488-S Chr12 24215377 24215379 0 0 Deletion 2 FN1488-S Chr12 6566532 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr12 8238326 8238327 0 0 Deletion 1 FN1488-S Chr12 8602897 8602898 0 0 Deletion 1 FN1488-S Chr2 12263984 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN1488-S Chr2 18561505 18561518 0 0 Deletion 13 FN1488-S Chr2 24018353 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN1488-S Chr2 25130036 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1488-S Chr2 25130038 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1488-S Chr2 26939545 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN1488-S Chr2 27055578 27055580 0 0 Deletion 2 FN1488-S Chr2 27516494 27516496 0 0 Deletion 2 FN1488-S Chr2 27609006 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr2 28400932 28400934 0 0 Deletion 2 FN1488-S Chr2 32391894 32391895 0 0 Deletion 1 LOC_Os02g52960 PHD-finger domain containing protein, putative, expressed FN1488-S Chr2 33160894 33160914 0 0 Deletion 20 LOC_Os02g54120 CCR4-NOT transcription factor, putative, expressed FN1488-S Chr2 6051807 6051807 0 0 Insertion 1 FN1488-S Chr2 7719174 7719174 0 0 Insertion 1 LOC_Os02g14130 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN1488-S Chr3 15061050 15061050 0 0 Insertion 1 FN1488-S Chr3 17866126 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1488-S Chr3 17866283 17869259 0 0 Deletion 2976 FN1488-S Chr3 18392873 18392874 0 0 Deletion 1 FN1488-S Chr3 19961395 19961399 0 0 Deletion 4 FN1488-S Chr3 20053998 C-T 0 0 Single Base Substitution 0 INTRON Homo FN1488-S Chr3 2100867 T-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION Homo FN1488-S Chr3 22910304 22910304 0 0 Insertion 6 FN1488-S Chr3 28075037 28075039 0 0 Deletion 2 FN1488-S Chr4 1312023 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr4 18330057 18330057 0 0 Insertion 12 FN1488-S Chr4 27866918 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1488-S Chr4 3988999 3988999 0 0 Insertion 1 FN1488-S Chr4 4281657 4281665 0 0 Deletion 8 FN1488-S Chr5 12270422 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1488-S Chr5 12356799 12356800 0 0 Deletion 1 LOC_Os05g21000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1488-S Chr5 17176745 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME Homo FN1488-S Chr5 194174 194174 0 0 Insertion 4 FN1488-S Chr5 21073837 21073838 0 0 Deletion 1 FN1488-S Chr5 27160672 27160694 0 0 Deletion 22 FN1488-S Chr5 29090880 29090891 0 0 Deletion 11 FN1488-S Chr5 29411337 29411337 0 0 Insertion 42 FN1488-S Chr5 628755 628790 0 0 Deletion 35 FN1488-S Chr6 13420714 C-T 0 0 Single Base Substitution 0 INTRON HET FN1488-S Chr6 23217509 23217510 0 0 Deletion 1 FN1488-S Chr6 26102884 26102887 0 0 Deletion 3 FN1488-S Chr6 8349815 8349829 0 0 Deletion 14 FN1488-S Chr7 13285150 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr7 13687595 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr7 14673526 14673528 0 0 Deletion 2 FN1488-S Chr7 15755722 15755724 0 0 Deletion 2 LOC_Os07g27150 trafficking protein particle complex subunit 4, putative, expressed FN1488-S Chr7 16353850 16353852 0 0 Deletion 2 FN1488-S Chr7 19384498 C-T 0 0 Single Base Substitution 0 INTRON Homo FN1488-S Chr7 2058107 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr7 21881014 21881015 0 0 Deletion 1 FN1488-S Chr7 6669607 6669608 0 0 Deletion 1 FN1488-S Chr8 13742031 G-T 0 0 Single Base Substitution 0 INTRON Homo FN1488-S Chr8 13742032 A-T 0 0 Single Base Substitution 0 INTRON Homo FN1488-S Chr8 14146283 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1488-S Chr9 10582264 10582269 0 0 Deletion 5 FN1488-S Chr9 10879365 10879402 0 0 Deletion 37 FN1488-S Chr9 20269090 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g34330 helix-loop-helix DNA-binding domain containing protein, expressed FN1488-S Chr9 3643453 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1488-S Chr9 9058670 9058809 0 0 Deletion 139