FN1514-S Chr1 12945458 12945460 0 0 Deletion 2 FN1514-S Chr1 13837859 13837861 0 0 Deletion 2 FN1514-S Chr1 30684929 30684929 0 0 Insertion 2 FN1514-S Chr1 34456218 34456218 0 0 Insertion 1 FN1514-S Chr1 8090802 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr10 16226519 16226519 0 0 Insertion 2 FN1514-S Chr10 16607758 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1514-S Chr10 17119661 17119685 0 0 Deletion 24 FN1514-S Chr10 201534 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g01330 retrotransposon protein, putative, unclassified, expressed FN1514-S Chr10 20546495 20546495 0 0 Insertion 1 FN1514-S Chr10 21348831 21348849 0 0 Deletion 18 FN1514-S Chr11 10630214 10630219 0 0 Deletion 5 FN1514-S Chr11 12315140 12315295 0 0 Deletion 155 FN1514-S Chr11 15990743 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr11 16140202 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr11 16684297 16684331 0 0 Deletion 34 FN1514-S Chr11 22107950 22107950 0 0 Insertion 6 LOC_Os11g37430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr11 3274761 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr11 7213509 Chr2 13371802 0 Translocation 0 FN1514-S Chr11 7213520 7720228 0 0 Inversion 506708 FN1514-S Chr11 7427059 Chr2 15984201 0 Translocation 0 FN1514-S Chr11 7642485 Chr2 13371806 0 Translocation 0 LOC_Os11g13850 rieske domain containing protein, expressed FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13860 cyclin-dependent kinase, putative, expressed FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13870 plant-specific domain TIGR01627 family protein, expressed FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13880 expressed protein FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13890 chlorophyll A-B binding protein, putative, expressed FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13900 expressed protein FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13910 expressed protein FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13920 retrotransposon protein, putative, unclassified, expressed FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13930 ZF-HD protein dimerisation region containing protein, expressed FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13934 expressed protein FN1514-S Chr11 7643001 7720000 0 0 Deletion 77000 LOC_Os11g13940 NBS-LRR disease resistance protein, putative, expressed FN1514-S Chr12 11379066 11379067 0 0 Deletion 1 FN1514-S Chr12 11622133 11622138 0 0 Deletion 5 FN1514-S Chr12 11637665 11637666 0 0 Deletion 1 FN1514-S Chr12 12276598 12276617 0 0 Deletion 19 LOC_Os12g21810 expressed protein FN1514-S Chr12 16027208 16027209 0 0 Deletion 1 FN1514-S Chr12 16895019 16895029 0 0 Deletion 10 FN1514-S Chr12 17346668 17346926 0 0 Inversion 258 FN1514-S Chr12 17461941 17461942 0 0 Deletion 1 FN1514-S Chr12 21090321 Chr4 10335314 0 Translocation 0 LOC_Os04g18660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr12 21090321 Chr4 10335314 0 Translocation 0 LOC_Os12g34730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr12 21094577 Chr4 10335311 0 Translocation 0 LOC_Os04g18660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr12 21094577 Chr4 10335311 0 Translocation 0 LOC_Os12g34740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr12 21094717 Chr7 24651099 0 Translocation 0 LOC_Os12g34740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr12 21094718 Chr7 24651100 0 Translocation 0 LOC_Os12g34740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr12 22997301 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g37470 conserved hypothetical protein FN1514-S Chr12 25521561 25521562 0 0 Deletion 1 FN1514-S Chr12 25546543 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr12 26527945 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr12 26846070 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr12 27201087 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr12 3881073 G-A 0 0 Single Base Substitution 0 INTRON Homo FN1514-S Chr12 5752453 T-C 0 0 Single Base Substitution 0 INTRON HET FN1514-S Chr12 9469429 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr2 13416055 13456470 0 0 Inversion 40415 LOC_Os02g22570 retrotransposon protein, putative, unclassified, expressed FN1514-S Chr2 14922047 A-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Homo FN1514-S Chr2 15982298 15984167 0 0 Deletion 1869 FN1514-S Chr2 17832814 17832814 0 0 Insertion 15 FN1514-S Chr2 18112816 A-G 0 0 Single Base Substitution 0 INTRON Homo FN1514-S Chr2 20696562 20696570 0 0 Deletion 8 FN1514-S Chr2 23553266 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1514-S Chr2 29803973 29803984 0 0 Deletion 11 FN1514-S Chr2 29823842 T-C 0 0 Single Base Substitution 0 INTRON HET FN1514-S Chr2 35475567 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr2 35773606 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr3 1263308 1263308 0 0 Insertion 1 FN1514-S Chr3 13585056 13585057 0 0 Deletion 1 FN1514-S Chr3 14274349 14274350 0 0 Deletion 1 FN1514-S Chr3 14614914 14614920 0 0 Deletion 6 FN1514-S Chr3 14961494 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr3 17907389 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr3 19117932 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr3 19575362 19575362 0 0 Insertion 78 FN1514-S Chr3 2813158 G-A 0 0 Single Base Substitution 0 INTRON HET FN1514-S Chr3 30997574 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1514-S Chr3 5018492 5018497 0 0 Deletion 5 FN1514-S Chr3 5048986 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1514-S Chr3 5048988 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1514-S Chr3 5056695 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr3 6553764 6553764 0 0 Insertion 10 FN1514-S Chr3 6623928 6623930 0 0 Deletion 2 FN1514-S Chr3 7939365 7939365 0 0 Insertion 9 LOC_Os03g14615 LTPL117 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN1514-S Chr4 1191208 1191222 0 0 Deletion 14 FN1514-S Chr4 14317018 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr4 14926925 14926939 0 0 Deletion 14 FN1514-S Chr4 21582900 21582916 0 0 Deletion 16 FN1514-S Chr4 27050849 27050852 0 0 Deletion 3 FN1514-S Chr4 31587898 C-T 0 0 Single Base Substitution 0 INTRON HET FN1514-S Chr4 33457528 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr4 34183835 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g57460 retrotransposon protein, putative, unclassified, expressed FN1514-S Chr4 4747211 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr4 5021409 5021411 0 0 Deletion 2 FN1514-S Chr4 5472791 5472791 0 0 Insertion 1 FN1514-S Chr4 970506 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr5 17228704 17234161 0 0 Deletion 5457 LOC_Os05g29780 retrotransposon protein, putative, unclassified, expressed FN1514-S Chr5 22701209 22701213 0 0 Deletion 4 FN1514-S Chr5 25428218 25428219 0 0 Deletion 1 FN1514-S Chr5 25529331 25535980 0 0 Inversion 6649 FN1514-S Chr5 28297593 28297594 0 0 Deletion 1 FN1514-S Chr5 9181533 9181534 0 0 Deletion 1 FN1514-S Chr6 11088113 11088114 0 0 Deletion 1 FN1514-S Chr6 12672722 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1514-S Chr6 1698863 A-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN1514-S Chr6 17652576 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1514-S Chr6 19659024 19659025 0 0 Deletion 1 FN1514-S Chr6 22182993 22182993 0 0 Insertion 9 FN1514-S Chr6 3361757 C-T 0 0 Single Base Substitution 0 INTRON HET FN1514-S Chr6 4063511 4063548 0 0 Deletion 37 LOC_Os06g08360 ethylene-responsive element-binding protein, putative, expressed FN1514-S Chr7 11926411 C-T 0 0 Single Base Substitution 0 INTRON HET FN1514-S Chr7 12925214 12925214 0 0 Insertion 22 FN1514-S Chr7 15956030 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN1514-S Chr7 1885820 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr7 18898804 18898804 0 0 Insertion 1 FN1514-S Chr7 21698685 21698693 0 0 Deletion 8 FN1514-S Chr7 23847848 23847855 0 0 Deletion 7 FN1514-S Chr7 8437178 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Homo FN1514-S Chr7 9457039 9457040 0 0 Deletion 1 FN1514-S Chr8 13758559 13758560 0 0 Deletion 1 FN1514-S Chr8 14433029 14433063 0 0 Deletion 34 FN1514-S Chr8 16925123 16928391 0 0 Deletion 3268 LOC_Os08g27790 retrotransposon protein, putative, unclassified, expressed FN1514-S Chr8 17964425 17964451 0 0 Deletion 26 FN1514-S Chr8 24481453 24481453 0 0 Insertion 30 FN1514-S Chr8 28094716 28094728 0 0 Deletion 12 LOC_Os08g44700 retrotransposon protein, putative, unclassified, expressed FN1514-S Chr8 28288483 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1514-S Chr8 2884665 2884665 0 0 Insertion 1 FN1514-S Chr8 6205969 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN1514-S Chr9 13805119 C-G 0 0 Single Base Substitution 0 INTRON HET FN1514-S Chr9 1385011 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1514-S Chr9 15853656 15853656 0 0 Insertion 48 FN1514-S Chr9 16562308 16562309 0 0 Deletion 1 FN1514-S Chr9 18604632 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr9 1922593 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr9 20875543 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr9 5356654 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g09860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr9 5356657 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os09g09860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr9 5364586 5364605 0 0 Deletion 19 LOC_Os09g09870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr9 6341862 T-G 0 0 Single Base Substitution 0 INTRON HET FN1514-S Chr9 7847293 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1514-S Chr9 873113 873117 0 0 Deletion 4 FN1514-S Chr9 88258 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g01060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1514-S Chr9 9964634 9964637 0 0 Deletion 3