FN1548-S Chr1 1885772 1943612 0 0 Inversion 0 FN1548-S Chr1 1885803 1943635 0 0 Inversion 0 FN1548-S Chr1 2019001 2037000 0 0 Deletion 17999 LOC_Os01g04530 expressed protein FN1548-S Chr1 2019001 2037000 0 0 Deletion 17999 LOC_Os01g04540 serine/threonine-protein kinase At1g18390 precursor, putative, expressed FN1548-S Chr1 2019001 2037000 0 0 Deletion 17999 LOC_Os01g04550 expressed protein FN1548-S Chr1 2257186 2257187 0 0 Insertion 1 HET FN1548-S Chr1 35830526 35830528 0 0 Deletion 2 HET FN1548-S Chr1 36864959 C-A 0 0 Single Base Substitution 0 HET FN1548-S Chr1 9382197 9382198 0 0 Deletion 1 Homo FN1548-S Chr10 11112229 G-T 0 0 Single Base Substitution 0 Homo FN1548-S Chr10 11112230 A-T 0 0 Single Base Substitution 0 Homo FN1548-S Chr10 16383001 16416000 0 0 Deletion 32999 LOC_Os10g31240 plant protein of unknown function domain containing protein, expressed FN1548-S Chr10 16383001 16416000 0 0 Deletion 32999 LOC_Os10g31250 expressed protein FN1548-S Chr10 16383001 16416000 0 0 Deletion 32999 LOC_Os10g31280 expressed protein FN1548-S Chr10 16383001 16416000 0 0 Deletion 32999 LOC_Os10g31290 expressed protein FN1548-S Chr10 17762673 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g33680 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed FN1548-S Chr10 5994912 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g10830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1548-S Chr10 7116559 7116562 0 0 Deletion 3 Homo FN1548-S Chr10 7766001 7785000 0 0 Deletion 18999 LOC_Os10g14814 ATFMN/FHY, putative, expressed FN1548-S Chr10 7766001 7785000 0 0 Deletion 18999 LOC_Os10g14830 retrotransposon protein, putative, Ty3-gypsy subclass FN1548-S Chr10 7766001 7785000 0 0 Deletion 18999 LOC_Os10g14840 retrotransposon protein, putative, unclassified, expressed FN1548-S Chr10 7766001 7785000 0 0 Deletion 18999 LOC_Os10g14850 retrotransposon, putative, centromere-specific, expressed FN1548-S Chr10 7766001 7785000 0 0 Deletion 18999 LOC_Os10g14860 retrotransposon protein, putative, unclassified, expressed FN1548-S Chr10 7766001 7785000 0 0 Deletion 18999 LOC_Os10g14870 heavy metal-associated domain containing protein, expressed FN1548-S Chr10 7766001 7785000 0 0 Deletion 18999 LOC_Os10g14880 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1548-S Chr10 9792773 9792776 0 0 Deletion 3 Homo FN1548-S Chr11 10862814 10862818 0 0 Deletion 4 HET FN1548-S Chr11 2390001 2412000 0 0 Deletion 21999 LOC_Os11g05380 cytochrome P450, putative, expressed FN1548-S Chr12 12750001 12770000 0 0 Deletion 19999 LOC_Os12g22600 tRNA synthetases class II domain containing protein, expressed FN1548-S Chr12 12920001 12952000 0 0 Deletion 31999 LOC_Os12g22890 transposon protein, putative, CACTA, En/Spm sub-class FN1548-S Chr12 12920001 12952000 0 0 Deletion 31999 LOC_Os12g22900 transposon protein, putative, CACTA, En/Spm sub-class FN1548-S Chr12 12920001 12952000 0 0 Deletion 31999 LOC_Os12g22910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1548-S Chr12 12920001 12952000 0 0 Deletion 31999 LOC_Os12g22920 expressed protein FN1548-S Chr12 16667842 16667845 0 0 Deletion 3 HET FN1548-S Chr12 22829315 22829316 0 0 Deletion 1 HET FN1548-S Chr12 24882844 24882849 0 0 Deletion 5 HET FN1548-S Chr12 25908088 Chr8 23687029 0 Translocation 0 FN1548-S Chr12 9278001 9294000 0 0 Deletion 15999 LOC_Os12g16220 nmrA-like family domain containing protein, expressed FN1548-S Chr12 9278001 9294000 0 0 Deletion 15999 LOC_Os12g16230 exostosin, putative, expressed FN1548-S Chr12 9278001 9294000 0 0 Deletion 15999 LOC_Os12g16240 nmrA-like family domain containing protein, expressed FN1548-S Chr12 9278001 9294000 0 0 Deletion 15999 LOC_Os12g16250 nmrA-like family domain containing protein, expressed FN1548-S Chr2 15442153 15442154 0 0 Deletion 1 HET FN1548-S Chr2 16695843 A-G 0 0 Single Base Substitution 0 HET FN1548-S Chr2 20406461 20406484 0 0 Deletion 23 HET FN1548-S Chr2 28633238 A-G 0 0 Single Base Substitution 0 Homo FN1548-S Chr2 32029286 32029293 0 0 Deletion 7 Homo FN1548-S Chr2 5005001 5018000 0 0 Deletion 12999 LOC_Os02g09730 hypothetical protein FN1548-S Chr2 533743 C-T 0 0 Single Base Substitution 0 Homo FN1548-S Chr2 5621033 G-A 0 0 Single Base Substitution 0 Homo FN1548-S Chr2 6333331 6333332 0 0 Deletion 1 HET FN1548-S Chr2 9017589 A-C 0 0 Single Base Substitution 0 HET FN1548-S Chr3 12716948 C-A 0 0 Single Base Substitution 0 HET FN1548-S Chr3 17243800 17243801 0 0 Insertion 1 HET FN1548-S Chr3 24667001 24693000 0 0 Deletion 25999 LOC_Os03g43960 expressed protein FN1548-S Chr3 30842275 G-A 0 0 Single Base Substitution 0 HET FN1548-S Chr3 3268638 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g06510 KIP1, putative, expressed FN1548-S Chr4 24944748 C-G 0 0 Single Base Substitution 0 HET FN1548-S Chr4 4591859 G-A 0 0 Single Base Substitution 0 Homo FN1548-S Chr4 480762 480763 0 0 Deletion 1 HET FN1548-S Chr5 12550001 12577000 0 0 Deletion 26999 LOC_Os05g21230 retrotransposon protein, putative, unclassified, expressed FN1548-S Chr5 12550001 12577000 0 0 Deletion 26999 LOC_Os05g21240 expressed protein FN1548-S Chr5 1564874 1564884 0 0 Deletion 10 Homo FN1548-S Chr5 16791001 16813000 0 0 Deletion 21999 LOC_Os05g28650 expressed protein FN1548-S Chr5 17023001 17047000 0 0 Deletion 23999 LOC_Os05g29040 expressed protein FN1548-S Chr5 19193910 19193912 0 0 Insertion 2 HET FN1548-S Chr5 1996884 1996886 0 0 Insertion 2 HET FN1548-S Chr5 8799907 A-G 0 0 Single Base Substitution 0 Homo FN1548-S Chr6 11084304 G-A 0 0 Single Base Substitution 0 HET FN1548-S Chr6 13891313 Chr3 23252557 0 Translocation 0 FN1548-S Chr6 15181722 A-G 0 0 Single Base Substitution 0 HET FN1548-S Chr6 21019001 21033000 0 0 Deletion 13999 LOC_Os06g35990 expressed protein FN1548-S Chr6 22337528 Chr3 30491781 0 Translocation 0 FN1548-S Chr6 25053167 T-A 0 0 Single Base Substitution 0 HET FN1548-S Chr6 25053168 T-A 0 0 Single Base Substitution 0 HET FN1548-S Chr6 25261685 25261688 0 0 Insertion 3 HET FN1548-S Chr6 27099001 27115000 0 0 Deletion 15999 LOC_Os06g44860 OsSPL10 - SBP-box gene family member, expressed FN1548-S Chr6 28059040 G-A 0 0 Single Base Substitution 0 HET FN1548-S Chr6 3706001 3721000 0 0 Deletion 14999 LOC_Os06g07660 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN1548-S Chr6 3706001 3721000 0 0 Deletion 14999 LOC_Os06g07670 expressed protein FN1548-S Chr6 4060614 4060621 0 0 Deletion 7 Homo FN1548-S Chr6 5789572 T-C 0 0 Single Base Substitution 0 HET FN1548-S Chr6 9327150 9327436 0 0 Inversion 0 LOC_Os06g16350 peroxidase precursor, putative, expressed FN1548-S Chr7 16686784 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g28510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1548-S Chr7 18266889 18805750 0 0 Inversion 0 LOC_Os07g30860 expressed protein FN1548-S Chr7 18266889 18805750 0 0 Inversion 0 LOC_Os07g31650 expressed protein FN1548-S Chr7 18266892 18805751 0 0 Inversion 0 LOC_Os07g30860 expressed protein FN1548-S Chr7 18266892 18805751 0 0 Inversion 0 LOC_Os07g31650 expressed protein FN1548-S Chr7 4765001 4810000 0 0 Deletion 44999 LOC_Os07g09120 expressed protein FN1548-S Chr7 4765001 4810000 0 0 Deletion 44999 LOC_Os07g09130 CHCH domain containing protein, expressed FN1548-S Chr7 4765001 4810000 0 0 Deletion 44999 LOC_Os07g09140 expressed protein FN1548-S Chr7 4765001 4810000 0 0 Deletion 44999 LOC_Os07g09150 expressed protein FN1548-S Chr7 4765001 4810000 0 0 Deletion 44999 LOC_Os07g09160 expressed protein FN1548-S Chr7 4765001 4810000 0 0 Deletion 44999 LOC_Os07g09170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1548-S Chr7 4765001 4810000 0 0 Deletion 44999 LOC_Os07g09180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1548-S Chr8 11178088 11179083 0 0 Deletion 995 splice_donor_variant&inframe_deletion&splice_region_variant&intron_variant HET LOC_Os08g18730 retrotransposon protein, putative, unclassified, expressed FN1548-S Chr8 16927514 T-C 0 0 Single Base Substitution 0 START_LOST Homo LOC_Os08g27790 retrotransposon protein, putative, unclassified, expressed FN1548-S Chr8 20469216 A-G 0 0 Single Base Substitution 0 Homo FN1548-S Chr8 24158590 24158592 0 0 Deletion 2 frameshift_variant HET LOC_Os08g38130 cytokinin-O-glucosyltransferase 1, putative, expressed FN1548-S Chr8 27063218 G-A 0 0 Single Base Substitution 0 HET FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07490 expressed protein FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07500 DUF617 domain containing protein, expressed FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07510 expressed protein FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07520 expressed protein FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07530 expressed protein FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07540 hemimethylated DNA binding domain containing protein, expressed FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07550 hAT dimerisation domain-containing protein, putative, expressed FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07560 retrotransposon protein, putative, Ty3-gypsy subclass FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07570 retrotransposon protein, putative, unclassified, expressed FN1548-S Chr8 4205001 4266000 0 0 Deletion 60999 LOC_Os08g07590 expressed protein FN1548-S Chr8 5910928 5910938 0 0 Deletion 10 frameshift_variant HET LOC_Os08g10190 retrotransposon protein, putative, unclassified, expressed FN1548-S Chr9 15170001 15202000 0 0 Deletion 31999 LOC_Os09g25340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1548-S Chr9 15170001 15202000 0 0 Deletion 31999 LOC_Os09g25350 transposon protein, putative, CACTA, En/Spm sub-class FN1548-S Chr9 15170001 15202000 0 0 Deletion 31999 LOC_Os09g25360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1548-S Chr9 15830749 G-A 0 0 Single Base Substitution 0 HET FN1548-S Chr9 17710001 17729000 0 0 Deletion 18999 FN1548-S Chr9 21971001 21989000 0 0 Deletion 17999 LOC_Os09g38150 expressed protein FN1548-S Chr9 21971001 21989000 0 0 Deletion 17999 LOC_Os09g38170 expressed protein FN1548-S Chr9 4587001 4603000 0 0 Deletion 15999 LOC_Os09g08720 cinnamoyl CoA reductase, putative, expressed FN1548-S Chr9 4587001 4603000 0 0 Deletion 15999 LOC_Os09g08730 pumilio domain-containing protein, putative, expressed FN1548-S Chr9 5215558 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g09670 expressed protein FN1548-S Chr9 5932770 5932779 0 0 Deletion 9 Homo FN1548-S Chr9 5997905 G-A 0 0 Single Base Substitution 0 Homo FN1548-S Chr9 5997906 C-T 0 0 Single Base Substitution 0 Homo FN1548-S Chr9 6321001 6369000 0 0 Deletion 47999 LOC_Os09g11370 expressed protein FN1548-S Chr9 6321001 6369000 0 0 Deletion 47999 LOC_Os09g11380 expressed protein FN1548-S Chr9 6321001 6369000 0 0 Deletion 47999 LOC_Os09g11390 transposon protein, putative, unclassified, expressed FN1548-S Chr9 6321001 6369000 0 0 Deletion 47999 LOC_Os09g11400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1548-S Chr9 6321001 6369000 0 0 Deletion 47999 LOC_Os09g11410 transposon protein, putative, CACTA, En/Spm sub-class FN1548-S Chr9 6321001 6369000 0 0 Deletion 47999 LOC_Os09g11420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1548-S Chr9 6321001 6369000 0 0 Deletion 47999 LOC_Os09g11440 expressed protein FN1548-S Chr9 8672209 C-T 0 0 Single Base Substitution 0 Homo FN1548-S Chr9 8672210 C-T 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os09g14620 retrotransposon protein, putative, unclassified, expressed