FN1640-S Chr1 1861379 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1640-S Chr1 22644925 22644925 0 0 Insertion 2 FN1640-S Chr1 2665738 C-A 0 0 Single Base Substitution 0 INTRON Homo FN1640-S Chr1 31843286 31843287 0 0 Deletion 1 FN1640-S Chr1 34007588 34007597 0 0 Deletion 9 FN1640-S Chr1 34579994 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1640-S Chr1 7142026 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr1 7562224 8321341 0 0 Inversion 759117 FN1640-S Chr1 7652148 7652148 0 0 Insertion 8 FN1640-S Chr1 7659033 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr1 8786598 8786600 0 0 Deletion 2 LOC_Os01g15630 zinc finger, C3HC4 type domain containing protein, expressed FN1640-S Chr10 17087722 17087730 0 0 Deletion 8 LOC_Os10g32620 expressed protein FN1640-S Chr10 18819607 Chr1 15982556 0 Translocation 0 LOC_Os10g35220 KH domain containing protein, putative, expressed FN1640-S Chr10 18819670 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1640-S Chr10 18819671 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1640-S Chr10 20544611 20544612 0 0 Deletion 1 FN1640-S Chr10 4300140 4300140 0 0 Insertion 14 FN1640-S Chr10 4677681 4677682 0 0 Deletion 1 FN1640-S Chr11 12653149 C-A 0 0 Single Base Substitution 0 INTRON HET FN1640-S Chr11 13504532 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr11 13504537 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr11 15180057 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr11 16326998 Chr3 8164305 0 Translocation 0 FN1640-S Chr11 21618775 21618781 0 0 Deletion 6 FN1640-S Chr11 25676938 25676955 0 0 Deletion 17 LOC_Os11g42640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1640-S Chr11 2581389 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr11 3442033 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr11 7587452 G-A 0 0 Single Base Substitution 0 START_GAINED HET LOC_Os11g13800 expressed protein FN1640-S Chr12 1565692 G-A 0 0 Single Base Substitution 0 INTRON HET FN1640-S Chr12 21711914 G-A 0 0 Single Base Substitution 0 INTRON HET FN1640-S Chr12 24801123 24801125 0 0 Deletion 2 FN1640-S Chr12 26695193 26695194 0 0 Deletion 1 FN1640-S Chr2 11828613 11828613 0 0 Insertion 1 FN1640-S Chr2 13931491 13931502 0 0 Deletion 11 FN1640-S Chr2 14617772 14617778 0 0 Deletion 6 FN1640-S Chr2 1929448 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME Homo FN1640-S Chr2 21484120 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr2 35762245 35762248 0 0 Deletion 3 LOC_Os02g58490 PINHEAD, putative, expressed FN1640-S Chr2 8897338 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr3 16476430 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr3 25643060 25643060 0 0 Insertion 60 FN1640-S Chr3 26617676 26617677 0 0 Deletion 1 LOC_Os03g47050 expressed protein FN1640-S Chr3 28211817 28211834 0 0 Deletion 17 FN1640-S Chr3 33382960 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1640-S Chr3 36197599 36197600 0 0 Deletion 1 FN1640-S Chr4 16102848 16102848 0 0 Insertion 1 FN1640-S Chr4 18854672 Chr3 12186486 0 Translocation 0 LOC_Os03g21300 expressed protein FN1640-S Chr4 18859146 Chr3 12186577 0 Translocation 0 LOC_Os03g21300 expressed protein FN1640-S Chr4 20186664 20186669 0 0 Deletion 5 FN1640-S Chr4 21130579 21130579 0 0 Insertion 2 FN1640-S Chr4 2186814 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g04574 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1640-S Chr4 21942391 T-C 0 0 Single Base Substitution 0 INTRON HET FN1640-S Chr4 23521677 23521678 0 0 Deletion 1 FN1640-S Chr4 27673401 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr4 28784630 28784632 0 0 Deletion 2 FN1640-S Chr4 31588963 31588971 0 0 Deletion 8 FN1640-S Chr4 8359870 8359877 0 0 Deletion 7 FN1640-S Chr5 12300944 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr5 19768810 19768810 0 0 Insertion 2 LOC_Os05g33610 expressed protein FN1640-S Chr5 23299236 23299237 0 0 Deletion 1 LOC_Os05g39690 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN1640-S Chr6 14631535 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1640-S Chr6 1785927 1785928 0 0 Deletion 1 FN1640-S Chr6 22027027 22027027 0 0 Insertion 12 FN1640-S Chr6 2421030 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1640-S Chr6 30084225 30084225 0 0 Insertion 1 FN1640-S Chr6 31100361 31100366 0 0 Deletion 5 FN1640-S Chr6 4392382 4392387 0 0 Deletion 5 FN1640-S Chr7 11930655 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr7 12584989 12584998 0 0 Deletion 9 LOC_Os07g22410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1640-S Chr7 13010824 13010825 0 0 Deletion 1 FN1640-S Chr7 15379806 15379807 0 0 Deletion 1 FN1640-S Chr7 20642261 20642270 0 0 Deletion 9 LOC_Os07g34410 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr7 21512454 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr7 23810125 A-G 0 0 Single Base Substitution 0 INTRON HET FN1640-S Chr7 23940824 23940825 0 0 Deletion 1 FN1640-S Chr7 24144354 24144355 0 0 Deletion 1 FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26140 retrotransposon, putative, centromere-specific, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26150 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26160 retrotransposon, putative, centromere-specific, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26170 retrotransposon protein, putative, unclassified FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26180 dirigent, putative, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26200 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26210 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26220 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26230 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26240 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26250 retrotransposon protein, putative, unclassified FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26270 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26300 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26310 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26320 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26330 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26340 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26350 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26360 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26370 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26380 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26390 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26400 retrotransposon, putative, centromere-specific, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26409 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26420 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26430 transposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26440 transposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26450 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26460 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26470 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26480 transposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26490 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26500 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26510 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26520 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26530 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26544 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26560 dirigent, putative FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26580 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26590 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26610 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26620 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26630 hypothetical protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26650 retrotransposon, putative, centromere-specific, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26660 retrotransposon, putative, centromere-specific, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26670 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26680 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26685 glycerol 3-phosphate permease, putative FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26690 retrotransposon protein, putative, Ty1-copia subclass FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26700 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26710 plant protein of unknown function domain containing protein, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26720 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26730 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26750 retrotransposon protein, putative, Ty3-gypsy subclass FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26760 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26770 retrotransposon protein, putative, unclassified FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26780 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26790 retrotransposon protein, putative, unclassified, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26800 retrotransposon protein, putative, Ty3-gypsy subclass FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26810 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26820 plant protein of unknown function domain containing protein, expressed FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26830 expressed protein FN1640-S Chr8 15895001 16331000 0 0 Deletion 436000 LOC_Os08g26840 plant protein of unknown function domain containing protein, expressed FN1640-S Chr8 15920471 Chr3 19715626 0 Translocation 0 FN1640-S Chr8 15920939 Chr3 19715612 0 Translocation 0 LOC_Os08g26170 retrotransposon protein, putative, unclassified FN1640-S Chr8 16115541 16115542 0 0 Deletion 1 FN1640-S Chr8 16464461 16464461 0 0 Insertion 1 FN1640-S Chr8 16895193 16895215 0 0 Deletion 22 FN1640-S Chr8 21613382 21613390 0 0 Deletion 8 FN1640-S Chr8 24222591 24222601 0 0 Deletion 10 FN1640-S Chr8 24464169 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr8 6898805 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1640-S Chr8 7071088 7071101 0 0 Deletion 13 FN1640-S Chr8 9145625 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1640-S Chr9 10707080 10707080 0 0 Insertion 2 FN1640-S Chr9 13069920 Chr4 18753766 0 Translocation 0 LOC_Os09g21590 conserved hypothetical protein FN1640-S Chr9 13069929 Chr4 18753548 0 Translocation 0 LOC_Os09g21590 conserved hypothetical protein FN1640-S Chr9 17833544 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1640-S Chr9 17833545 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1640-S Chr9 19002045 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g31494 conserved hypothetical protein FN1640-S Chr9 21043684 G-T 0 0 Single Base Substitution 0 INTERGENIC HET