FN1681-S Chr1 10872701 10872844 0 0 Inversion 0 LOC_Os01g19220 beta-D-xylosidase, putative, expressed FN1681-S Chr1 16329171 16329358 0 0 Inversion 0 FN1681-S Chr1 18243513 18243980 0 0 Inversion 0 LOC_Os01g33136 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr1 21189559 21189946 0 0 Inversion 0 LOC_Os01g37860 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr1 216802 216804 0 0 Insertion 2 HET FN1681-S Chr1 25988547 25988749 0 0 Inversion 0 FN1681-S Chr1 28924396 28924532 0 0 Inversion 0 FN1681-S Chr1 28924396 28924532 0 0 Inversion 0 LOC_Os01g50380 expressed protein FN1681-S Chr1 30731820 C-T 0 0 Single Base Substitution 0 Homo FN1681-S Chr1 3181121 3181444 0 0 Inversion 0 FN1681-S Chr1 32119784 32119982 0 0 Inversion 0 FN1681-S Chr1 34936798 34937054 0 0 Inversion 0 FN1681-S Chr1 3551029 3551238 0 0 Inversion 0 FN1681-S Chr1 3551029 3551238 0 0 Inversion 0 LOC_Os01g07480 DUF260 domain containing protein, putative, expressed FN1681-S Chr1 36965842 36966095 0 0 Inversion 0 FN1681-S Chr1 37094407 37094676 0 0 Inversion 0 FN1681-S Chr1 39564883 39565079 0 0 Inversion 0 LOC_Os01g68050 transmembrane amino acid transporter protein, putative, expressed FN1681-S Chr1 4160558 4160909 0 0 Inversion 0 FN1681-S Chr1 4245361 4245820 0 0 Inversion 0 FN1681-S Chr1 4245361 4245820 0 0 Inversion 0 LOC_Os01g08550 aminoacyl-tRNA synthetase, putative, expressed FN1681-S Chr1 743182 743322 0 0 Inversion 0 LOC_Os01g02350 receptor-like kinase ARK1AS, putative, expressed FN1681-S Chr10 11836193 11836418 0 0 Inversion 0 LOC_Os10g22770 expressed protein FN1681-S Chr10 12601676 12601677 0 0 Deletion 1 HET FN1681-S Chr10 14780579 14781014 0 0 Inversion 0 FN1681-S Chr10 18026780 18026784 0 0 Insertion 4 HET FN1681-S Chr10 21173957 21174165 0 0 Inversion 0 LOC_Os10g39620 ubiquitin family protein, putative, expressed FN1681-S Chr10 21602933 21603110 0 0 Inversion 0 LOC_Os10g40324 expressed protein FN1681-S Chr10 22014883 C-A 0 0 Single Base Substitution 0 Homo FN1681-S Chr10 22974931 22974946 0 0 Deletion 15 HET FN1681-S Chr10 6491200 6491489 0 0 Inversion 0 FN1681-S Chr10 8097515 Chr1 16931702 0 Translocation 0 FN1681-S Chr10 838121 838451 0 0 Inversion 0 LOC_Os10g02340 peptide transporter PTR2, putative, expressed FN1681-S Chr10 9994992 9995181 0 0 Inversion 0 LOC_Os10g19930 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr11 11138847 11138964 0 0 Inversion 0 FN1681-S Chr11 11252026 11252323 0 0 Inversion 0 LOC_Os11g19520 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr11 11625001 11646000 0 0 Deletion 20999 LOC_Os11g20130 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr11 11625001 11646000 0 0 Deletion 20999 LOC_Os11g20140 expressed protein FN1681-S Chr11 11625001 11646000 0 0 Deletion 20999 LOC_Os11g20150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1681-S Chr11 14274426 14274570 0 0 Inversion 0 LOC_Os11g25050 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr11 14780780 14780978 0 0 Inversion 0 FN1681-S Chr11 14793715 14793977 0 0 Inversion 0 LOC_Os11g25930 retrotransposon protein, putative, unclassified FN1681-S Chr11 21780483 21780495 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os11g36920 expressed protein FN1681-S Chr11 2254772 2254943 0 0 Inversion 0 LOC_Os11g05130 PHD-finger family protein, expressed FN1681-S Chr11 26706957 26707418 0 0 Inversion 0 FN1681-S Chr11 26723783 26724075 0 0 Inversion 0 FN1681-S Chr11 26723783 26724075 0 0 Inversion 0 LOC_Os11g44230 expressed protein FN1681-S Chr11 5797435 5797628 0 0 Inversion 0 LOC_Os11g10570 NBS-LRR disease resistance protein, putative, expressed FN1681-S Chr12 1437552 1437816 0 0 Inversion 0 LOC_Os12g03594 OsFBX437 - F-box domain containing protein, expressed FN1681-S Chr12 16971351 16971487 0 0 Inversion 0 FN1681-S Chr12 17902543 17903047 0 0 Inversion 0 LOC_Os12g29950 nodulin, putative, expressed FN1681-S Chr12 1863821 1864091 0 0 Inversion 0 FN1681-S Chr12 19723045 19723191 0 0 Inversion 0 FN1681-S Chr12 2084375 2084549 0 0 Inversion 0 LOC_Os12g04840 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr12 22350509 22350869 0 0 Inversion 0 LOC_Os12g36510 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr12 24521150 24521299 0 0 Inversion 0 LOC_Os12g39700 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr12 25358511 25358828 0 0 Inversion 0 LOC_Os12g40950 expressed protein FN1681-S Chr12 2585937 2586248 0 0 Inversion 0 LOC_Os12g05620 hypothetical protein FN1681-S Chr12 26213432 26213711 0 0 Inversion 0 FN1681-S Chr12 7501383 7501772 0 0 Inversion 0 FN1681-S Chr2 10813739 10814144 0 0 Inversion 0 FN1681-S Chr2 14001587 14001759 0 0 Inversion 0 LOC_Os02g24170 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr2 15059225 15059343 0 0 Inversion 0 LOC_Os02g25720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1681-S Chr2 15737735 15738143 0 0 Inversion 0 FN1681-S Chr2 1798919 1799210 0 0 Inversion 0 FN1681-S Chr2 2014093 2014340 0 0 Inversion 0 LOC_Os02g04530 rust resistance-like protein RP1, putative, expressed FN1681-S Chr2 22558384 22558705 0 0 Inversion 0 FN1681-S Chr2 22655481 22655639 0 0 Inversion 0 FN1681-S Chr2 22655481 22655639 0 0 Inversion 0 LOC_Os02g37550 expressed protein FN1681-S Chr2 24687304 24687886 0 0 Inversion 0 LOC_Os02g40720 expressed protein FN1681-S Chr2 24750714 24750858 0 0 Inversion 0 LOC_Os02g40840 alcohol oxidase, putative, expressed FN1681-S Chr2 25424030 25424426 0 0 Inversion 0 LOC_Os02g42280 UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative, expressed FN1681-S Chr2 29948145 29948430 0 0 Inversion 0 LOC_Os02g48980 GPI-anchored protein, putative, expressed FN1681-S Chr2 31225927 31226030 0 0 Inversion 0 FN1681-S Chr2 32284815 32285028 0 0 Inversion 0 LOC_Os02g52800 OsMan03 - Endo-Beta-Mannanase, expressed FN1681-S Chr2 33386986 33387165 0 0 Inversion 0 LOC_Os02g54510 protein kinase domain containing protein, expressed FN1681-S Chr2 35498477 35498662 0 0 Inversion 0 LOC_Os02g57960 Leucine Rich Repeat family protein, expressed FN1681-S Chr2 6073594 6073940 0 0 Inversion 0 LOC_Os02g11760 pleiotropic drug resistance protein, putative, expressed FN1681-S Chr3 1161440 1161857 0 0 Inversion 0 FN1681-S Chr3 12271034 12271176 0 0 Inversion 0 FN1681-S Chr3 12945703 12945812 0 0 Inversion 0 LOC_Os03g22540 jmjC domain containing protein, expressed FN1681-S Chr3 16628827 16629178 0 0 Inversion 0 LOC_Os03g29240 PDI, putative, expressed FN1681-S Chr3 20047930 20048266 0 0 Inversion 0 FN1681-S Chr3 20440096 C-T 0 0 Single Base Substitution 0 Homo FN1681-S Chr3 21813942 C-T 0 0 Single Base Substitution 0 Homo FN1681-S Chr3 24022727 24023275 0 0 Inversion 0 LOC_Os03g43060 OsFBX96 - F-box domain containing protein, expressed FN1681-S Chr3 26756738 26757287 0 0 Inversion 0 FN1681-S Chr3 2748229 2748444 0 0 Inversion 0 LOC_Os03g05530 nodulin, putative, expressed FN1681-S Chr3 27526555 27526744 0 0 Inversion 0 LOC_Os03g48330 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr3 27709226 27709365 0 0 Inversion 0 LOC_Os03g48600 domain of unknown function DUF966 domain containing protein, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50860 histidine kinase, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50870 expressed protein FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50880 class I glutamine amidotransferase, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50885 actin, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50900 transposon protein, putative, unclassified, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50920 ZF-HD protein dimerisation region containing protein, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50940 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50960 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50970 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50980 ATSIZ1/SIZ1, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g50990 expressed protein FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g51000 3,4-dihydroxy-2-butanone kinase, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g51010 hydrolase, alpha/beta fold family domain containing protein, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g51020 expressed protein FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g51030 phytochrome A, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g51040 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g51050 peptide transporter PTR2, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g51060 inactive receptor kinase At2g26730 precursor, putative, expressed FN1681-S Chr3 29057001 29206000 0 0 Deletion 148999 LOC_Os03g51080 glutamate decarboxylase, putative, expressed FN1681-S Chr3 29659055 29659229 0 0 Inversion 0 FN1681-S Chr3 30269940 30270102 0 0 Inversion 0 LOC_Os03g52794 phosphatidylinositol kinase, putative, expressed FN1681-S Chr3 31021183 31021617 0 0 Inversion 0 LOC_Os03g54114 hypothetical protein FN1681-S Chr3 31400658 31401011 0 0 Inversion 0 LOC_Os03g55180 DUF1336 domain containing protein, expressed FN1681-S Chr3 4209546 4210027 0 0 Inversion 0 LOC_Os03g08270 ataxin-2 C-terminal region family protein, expressed FN1681-S Chr3 5260054 5260178 0 0 Inversion 0 FN1681-S Chr3 5542003 5542105 0 0 Inversion 0 FN1681-S Chr3 5747480 5748054 0 0 Inversion 0 LOC_Os03g11150 expressed protein FN1681-S Chr3 6712509 6712618 0 0 Inversion 0 FN1681-S Chr3 7716346 7716476 0 0 Inversion 0 FN1681-S Chr3 7796573 T-A 0 0 Single Base Substitution 0 Homo FN1681-S Chr4 10597445 10965151 0 0 Inversion 0 LOC_Os04g19090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1681-S Chr4 13564858 G-A 0 0 Single Base Substitution 0 Homo FN1681-S Chr4 19777305 T-C 0 0 Single Base Substitution 0 Homo FN1681-S Chr4 21253403 21253717 0 0 Inversion 0 FN1681-S Chr4 2386253 2386405 0 0 Inversion 0 FN1681-S Chr4 2706290 2706473 0 0 Inversion 0 LOC_Os04g05400 expressed protein FN1681-S Chr4 29208271 29208465 0 0 Inversion 0 LOC_Os04g48980 hypothetical protein FN1681-S Chr4 29876530 29876987 0 0 Inversion 0 FN1681-S Chr4 32254473 32254793 0 0 Inversion 0 LOC_Os04g54140 receptor-like kinase, putative, expressed FN1681-S Chr4 32798715 32798851 0 0 Inversion 0 FN1681-S Chr4 33441828 33442050 0 0 Inversion 0 FN1681-S Chr4 34973316 34973735 0 0 Inversion 0 FN1681-S Chr4 35107746 35108042 0 0 Inversion 0 FN1681-S Chr4 5826656 5827073 0 0 Inversion 0 LOC_Os04g10720 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr4 7546307 Chr1 2551414 0 Translocation 0 LOC_Os01g05400 expressed protein FN1681-S Chr4 7546307 Chr1 2551414 0 Translocation 0 LOC_Os04g13530 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed FN1681-S Chr5 12088756 12088950 0 0 Inversion 0 FN1681-S Chr5 18072585 18072788 0 0 Inversion 0 FN1681-S Chr5 20360108 20539104 0 0 Inversion 0 LOC_Os05g34350 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr5 20360108 20539104 0 0 Inversion 0 LOC_Os05g34630 hydrolase, alpha/beta fold family domain containing protein, expressed FN1681-S Chr5 20360116 20539104 0 0 Inversion 0 LOC_Os05g34350 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr5 20360116 20539104 0 0 Inversion 0 LOC_Os05g34630 hydrolase, alpha/beta fold family domain containing protein, expressed FN1681-S Chr5 20932893 20933002 0 0 Inversion 0 LOC_Os05g35230 expressed protein FN1681-S Chr5 23764980 23765126 0 0 Inversion 0 FN1681-S Chr5 24638997 24639191 0 0 Inversion 0 FN1681-S Chr5 26172813 26173159 0 0 Inversion 0 FN1681-S Chr5 28443591 28443898 0 0 Inversion 0 LOC_Os05g49580 plastocyanin-like domain containing protein, putative, expressed FN1681-S Chr5 3778361 3778757 0 0 Inversion 0 FN1681-S Chr5 4448639 4448801 0 0 Inversion 0 LOC_Os05g08160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1681-S Chr5 818597 A-T 0 0 Single Base Substitution 0 Homo FN1681-S Chr5 8468542 C-G 0 0 Single Base Substitution 0 Homo FN1681-S Chr5 9025758 9025760 0 0 Deletion 2 HET FN1681-S Chr6 12695561 12695892 0 0 Inversion 0 FN1681-S Chr6 13992667 C-A 0 0 Single Base Substitution 0 HET FN1681-S Chr6 1471861 1472190 0 0 Inversion 0 LOC_Os06g03720 ribonucleoside-diphosphate reductase small chain, putative, expressed FN1681-S Chr6 1721917 T-C 0 0 Single Base Substitution 0 Homo FN1681-S Chr6 20108531 20108788 0 0 Inversion 0 LOC_Os06g34570 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr6 21044107 21044426 0 0 Inversion 0 FN1681-S Chr6 23334648 23334828 0 0 Inversion 0 LOC_Os06g39330 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN1681-S Chr6 24860355 24860356 0 0 Insertion 1 HET FN1681-S Chr6 25334967 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g42200 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr6 25385692 25386094 0 0 Inversion 0 FN1681-S Chr6 26785600 26785779 0 0 Inversion 0 LOC_Os06g44380 ubiquitin carboxyl-terminal hydrolase family protein, expressed FN1681-S Chr6 28516933 28517176 0 0 Inversion 0 FN1681-S Chr6 30158123 30158279 0 0 Inversion 0 FN1681-S Chr6 3773762 Chr2 15357418 0 Translocation 0 LOC_Os06g07780 vesicle-associated membrane protein, putative, expressed FN1681-S Chr6 4968669 4968924 0 0 Inversion 0 LOC_Os06g09750 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr6 6964017 6964021 0 0 Deletion 4 Homo FN1681-S Chr7 14559916 14559920 0 0 Deletion 4 HET FN1681-S Chr7 14614396 14614802 0 0 Inversion 0 FN1681-S Chr7 1784322 1784575 0 0 Inversion 0 LOC_Os07g04170 OsMADS90 - MADS-box family gene with M-beta type-box, expressed FN1681-S Chr7 19124745 19124992 0 0 Inversion 0 FN1681-S Chr7 22644370 Chr6 3770448 0 Translocation 0 LOC_Os06g07770 expressed protein FN1681-S Chr7 22644370 Chr6 3770448 0 Translocation 0 LOC_Os07g37750 ATMIN7, putative, expressed FN1681-S Chr7 25659266 25659447 0 0 Inversion 0 LOC_Os07g42834 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr7 25712487 25712612 0 0 Inversion 0 FN1681-S Chr7 26301468 26301918 0 0 Inversion 0 LOC_Os07g44000 expressed protein FN1681-S Chr7 6376004 6376231 0 0 Inversion 0 FN1681-S Chr7 9369276 9369483 0 0 Inversion 0 LOC_Os07g16070 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr8 11181878 11181879 0 0 Deletion 1 frameshift_variant HET LOC_Os08g18730 retrotransposon protein, putative, unclassified, expressed FN1681-S Chr8 1365042 1365369 0 0 Inversion 0 LOC_Os08g03040 expressed protein FN1681-S Chr8 14721641 14721646 0 0 Deletion 5 Homo FN1681-S Chr8 15389492 15389815 0 0 Inversion 0 FN1681-S Chr8 17058883 17058884 0 0 Insertion 1 HET FN1681-S Chr8 21430106 21430130 0 0 Deletion 24 Homo FN1681-S Chr8 2243001 2286000 0 0 Deletion 42999 LOC_Os08g04540 decarboxylase, putative, expressed FN1681-S Chr8 2243001 2286000 0 0 Deletion 42999 LOC_Os08g04550 expressed protein FN1681-S Chr8 2243001 2286000 0 0 Deletion 42999 LOC_Os08g04560 decarboxylase, putative, expressed FN1681-S Chr8 2243001 2286000 0 0 Deletion 42999 LOC_Os08g04570 expressed protein FN1681-S Chr8 2243001 2286000 0 0 Deletion 42999 LOC_Os08g04580 csAtPR5, putative, expressed FN1681-S Chr8 26515541 26515721 0 0 Inversion 0 FN1681-S Chr8 26987114 26987621 0 0 Inversion 0 FN1681-S Chr8 3413595 3413781 0 0 Inversion 0 FN1681-S Chr8 5065313 5065561 0 0 Inversion 0 FN1681-S Chr8 9501784 9502040 0 0 Inversion 0 FN1681-S Chr9 1341885 1342081 0 0 Inversion 0 LOC_Os09g02860 expressed protein FN1681-S Chr9 16462000 16462239 0 0 Inversion 0 LOC_Os09g27060 SNF2 family N-terminal domain containing protein, expressed FN1681-S Chr9 16905094 A-T 0 0 Single Base Substitution 0 Homo FN1681-S Chr9 17037305 17037595 0 0 Inversion 0 FN1681-S Chr9 22505510 22505637 0 0 Inversion 0 LOC_Os09g39180 RNA recognition motif containing protein, putative, expressed FN1681-S Chr9 9337206 9337369 0 0 Inversion 0 FN1681-S Chr9 9914983 9915136 0 0 Inversion 0 LOC_Os09g16240 expressed protein