FN1684-S Chr1 14628001 14667000 0 0 Deletion 38999 LOC_Os01g25839 retrotransposon protein, putative, Ty1-copia subclass FN1684-S Chr1 14628001 14667000 0 0 Deletion 38999 LOC_Os01g25860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr1 14704418 C-T 0 0 Single Base Substitution 0 HET FN1684-S Chr1 23831281 C-A 0 0 Single Base Substitution 0 Homo FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10480 expressed protein FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10490 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10500 vacuolar ATP synthase 98 kDa subunit, putative, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10510 expressed protein FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10520 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10530 expressed protein FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10540 cysteine-rich repeat secretory protein precursor, putative, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10550 hypothetical protein FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10560 invertase/pectin methylesterase inhibitor family protein, putative, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10570 expressed protein FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10580 expressed protein FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10590 retrotransposon protein, putative, Ty3-gypsy subclass FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10610 retrotransposon, putative, centromere-specific FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10620 invertase/pectin methylesterase inhibitor family protein, putative, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10630 plant invertase/pectin methylesterase inhibitor domain containing protein, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10650 retrotransposon protein, putative, unclassified FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10660 retrotransposon protein, putative, Ty3-gypsy subclass FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10664 hypothetical protein FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10700 invertase/pectin methylesterase inhibitor family protein, putative, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10720 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr10 5749001 5938000 0 0 Deletion 188999 LOC_Os10g10724 expressed protein FN1684-S Chr10 5948001 5980000 0 0 Deletion 31999 LOC_Os10g10760 expressed protein FN1684-S Chr10 5948001 5980000 0 0 Deletion 31999 LOC_Os10g10770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1684-S Chr10 5948001 5980000 0 0 Deletion 31999 LOC_Os10g10780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1684-S Chr10 5948001 5980000 0 0 Deletion 31999 LOC_Os10g10794 hypothetical protein FN1684-S Chr10 5948001 5980000 0 0 Deletion 31999 LOC_Os10g10798 expressed protein FN1684-S Chr10 5948001 5980000 0 0 Deletion 31999 LOC_Os10g10810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10860 expressed protein FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10870 protein kinase family protein, putative, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10880 expressed protein FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10904 retrotransposon protein, putative, Ty3-gypsy subclass FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10920 retrotransposon protein, putative, Ty3-gypsy subclass FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10929 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10938 transposon protein, putative, unclassified FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10950 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10970 transposon protein, putative, unclassified FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10980 OsFBX379 - F-box domain containing protein, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g10990 transcription initiation factor IIF, alpha subunit domain containing protein, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g11012 expressed protein FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g11022 expressed protein FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g11034 caffeine-induced death protein 1, putative, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g11060 ACI13, putative, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g11070 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr10 5990001 6132000 0 0 Deletion 141999 LOC_Os10g11080 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr10 6065356 Chr8 17058294 0 Translocation 0 FN1684-S Chr11 23686632 G-A 0 0 Single Base Substitution 0 HET FN1684-S Chr11 7651033 7651307 0 0 Inversion 0 FN1684-S Chr11 7651033 7651307 0 0 Inversion 0 LOC_Os11g13870 plant-specific domain TIGR01627 family protein, expressed FN1684-S Chr12 13064502 13064516 0 0 Deletion 14 frameshift_variant HET LOC_Os12g23100 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr12 14160001 14206000 0 0 Deletion 45999 LOC_Os12g24710 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr12 14160001 14206000 0 0 Deletion 45999 LOC_Os12g24730 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr12 14160001 14206000 0 0 Deletion 45999 LOC_Os12g24740 retrotransposon protein, putative, unclassified FN1684-S Chr12 14160001 14206000 0 0 Deletion 45999 LOC_Os12g24750 retrotransposon protein, putative, Ty3-gypsy subclass FN1684-S Chr12 14160001 14206000 0 0 Deletion 45999 LOC_Os12g24760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1684-S Chr12 22623003 Chr11 22169200 0 Translocation 0 FN1684-S Chr12 22623003 Chr11 22169200 0 Translocation 0 LOC_Os11g37540 protein phosphatase 2C, putative, expressed FN1684-S Chr12 25261065 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g40810 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr2 17297185 17297188 0 0 Deletion 3 Homo FN1684-S Chr2 20219669 C-G 0 0 Single Base Substitution 0 Homo FN1684-S Chr2 20219693 20219702 0 0 Deletion 9 Homo FN1684-S Chr2 29665276 G-A 0 0 Single Base Substitution 0 HET FN1684-S Chr2 30171544 G-T 0 0 Single Base Substitution 0 HET FN1684-S Chr3 19563243 19563398 0 0 Deletion 155 HET FN1684-S Chr3 27152164 27152167 0 0 Deletion 3 Homo FN1684-S Chr3 29371999 29372000 0 0 Deletion 1 frameshift_variant Homo LOC_Os03g51330 GRAS family transcription factor domain containing protein, expressed FN1684-S Chr3 3670556 A-T 0 0 Single Base Substitution 0 HET FN1684-S Chr3 4118953 G-A 0 0 Single Base Substitution 0 HET FN1684-S Chr3 4579949 4579960 0 0 Deletion 11 HET FN1684-S Chr3 6172544 6172555 0 0 Deletion 11 frameshift_variant HET LOC_Os03g11790 OsFBX79 - F-box domain containing protein, expressed FN1684-S Chr4 15370844 15370845 0 0 Deletion 1 HET FN1684-S Chr4 16980654 G-A 0 0 Single Base Substitution 0 Homo FN1684-S Chr4 20628290 G-T 0 0 Single Base Substitution 0 Homo FN1684-S Chr4 714545 C-T 0 0 Single Base Substitution 0 HET FN1684-S Chr4 7237537 C-T 0 0 Single Base Substitution 0 HET FN1684-S Chr5 14097629 14097630 0 0 Deletion 1 frameshift_variant HET LOC_Os05g24380 retrotransposon protein, putative, unclassified, expressed FN1684-S Chr5 3708097 T-A 0 0 Single Base Substitution 0 Homo FN1684-S Chr5 6329356 6329359 0 0 Deletion 3 HET FN1684-S Chr5 8408972 G-T 0 0 Single Base Substitution 0 HET FN1684-S Chr5 8408973 A-T 0 0 Single Base Substitution 0 HET FN1684-S Chr6 22872651 C-T 0 0 Single Base Substitution 0 HET FN1684-S Chr6 27963151 A-C 0 0 Single Base Substitution 0 Homo FN1684-S Chr6 27963152 G-T 0 0 Single Base Substitution 0 Homo FN1684-S Chr6 8170442 8170448 0 0 Insertion 6 HET FN1684-S Chr7 4886149 4886153 0 0 Deletion 4 frameshift_variant Homo LOC_Os07g09320 FHA domain containing protein, putative, expressed FN1684-S Chr7 8507019 C-T 0 0 Single Base Substitution 0 Homo FN1684-S Chr8 8809525 G-C 0 0 Single Base Substitution 0 Homo FN1684-S Chr9 11264984 A-G 0 0 Single Base Substitution 0 HET FN1684-S Chr9 11337999 11338125 0 0 Deletion 126 HET FN1684-S Chr9 14934536 14934538 0 0 Insertion 2 HET FN1684-S Chr9 2363449 G-T 0 0 Single Base Substitution 0 Homo FN1684-S Chr9 2364332 Chr1 2608429 0 Translocation 0 LOC_Os01g05500 zinc finger protein, putative, expressed FN1684-S Chr9 2364332 Chr1 2608429 0 Translocation 0 LOC_Os09g04450 expressed protein FN1684-S Chr9 2366161 Chr1 2608433 0 Translocation 0 LOC_Os01g05500 zinc finger protein, putative, expressed FN1684-S Chr9 2366161 Chr1 2608433 0 Translocation 0 LOC_Os09g04450 expressed protein FN1684-S Chr9 4185045 4185049 0 0 Deletion 4 Homo