FN1686-S Chr1 11113743 T-C 0 0 Single Base Substitution 0 Homo FN1686-S Chr1 17442466 17442471 0 0 Insertion 5 HET FN1686-S Chr1 24487615 24528653 0 0 Inversion 0 LOC_Os01g42990 PPR repeat domain containing protein, putative, expressed FN1686-S Chr1 24487616 24528655 0 0 Inversion 0 LOC_Os01g42990 PPR repeat domain containing protein, putative, expressed FN1686-S Chr1 24830824 G-A 0 0 Single Base Substitution 0 HET FN1686-S Chr1 3029062 3029067 0 0 Deletion 5 HET FN1686-S Chr1 38228430 38237042 0 0 Inversion 0 LOC_Os01g65840 pentatricopeptide, putative, expressed FN1686-S Chr1 38228430 38237042 0 0 Inversion 0 LOC_Os01g65850 CHD3-type chromatin-remodeling factor PICKLE, putative, expressed FN1686-S Chr1 38228435 38237049 0 0 Inversion 0 LOC_Os01g65840 pentatricopeptide, putative, expressed FN1686-S Chr1 38228435 38237049 0 0 Inversion 0 LOC_Os01g65850 CHD3-type chromatin-remodeling factor PICKLE, putative, expressed FN1686-S Chr1 3951643 3951645 0 0 Deletion 2 HET FN1686-S Chr1 4539256 4539397 0 0 Inversion 0 LOC_Os01g09020 WD domain, G-beta repeat domain containing protein, expressed FN1686-S Chr1 8502717 8502745 0 0 Deletion 28 Homo FN1686-S Chr10 10640033 10640043 0 0 Deletion 10 frameshift_variant HET LOC_Os10g21000 nucleoside-triphosphatase, putative, expressed FN1686-S Chr10 11434887 11434888 0 0 Deletion 1 HET FN1686-S Chr10 13007890 G-T 0 0 Single Base Substitution 0 HET FN1686-S Chr10 15157922 G-T 0 0 Single Base Substitution 0 HET FN1686-S Chr10 4782290 4782298 0 0 Deletion 8 HET FN1686-S Chr11 1139840 1139844 0 0 Deletion 4 HET FN1686-S Chr11 13220780 Chr5 29713108 0 Translocation 0 FN1686-S Chr11 24846925 T-A 0 0 Single Base Substitution 0 HET FN1686-S Chr11 27182187 27182197 0 0 Deletion 10 HET FN1686-S Chr11 641217 C-T 0 0 Single Base Substitution 0 HET FN1686-S Chr12 11694756 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g20110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr12 13335636 T-A 0 0 Single Base Substitution 0 HET FN1686-S Chr12 21567611 C-T 0 0 Single Base Substitution 0 HET FN1686-S Chr12 24044074 G-A 0 0 Single Base Substitution 0 Homo FN1686-S Chr12 762571 762572 0 0 Deletion 1 HET FN1686-S Chr2 1276435 1276437 0 0 Deletion 2 Homo FN1686-S Chr2 15923141 T-A 0 0 Single Base Substitution 0 HET FN1686-S Chr2 28969382 C-A 0 0 Single Base Substitution 0 Homo FN1686-S Chr2 30918847 T-C 0 0 Single Base Substitution 0 Homo FN1686-S Chr2 31184821 31184823 0 0 Deletion 2 Homo FN1686-S Chr2 32437411 C-T 0 0 Single Base Substitution 0 Homo FN1686-S Chr2 5262883 5263368 0 0 Inversion 0 LOC_Os02g10100 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed FN1686-S Chr2 5604034 G-A 0 0 Single Base Substitution 0 HET FN1686-S Chr3 11897644 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g20970 phospholipid-transporting ATPase 1, putative, expressed FN1686-S Chr3 17126874 17126893 0 0 Deletion 19 HET FN1686-S Chr3 17220001 17224000 0 0 Deletion 3999 LOC_Os03g30170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr3 17220001 17224000 0 0 Deletion 3999 LOC_Os03g30180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr3 2107204 2107209 0 0 Deletion 5 Homo FN1686-S Chr3 23771650 23771654 0 0 Deletion 4 HET FN1686-S Chr3 7943427 7943428 0 0 Deletion 1 HET FN1686-S Chr4 10416415 G-C 0 0 Single Base Substitution 0 HET FN1686-S Chr4 11014444 11341741 0 0 Inversion 0 FN1686-S Chr4 14319894 A-T 0 0 Single Base Substitution 0 HET FN1686-S Chr4 16522544 16522747 0 0 Inversion 0 FN1686-S Chr4 23746182 C-T 0 0 Single Base Substitution 0 HET FN1686-S Chr4 2492686 2493096 0 0 Inversion 0 FN1686-S Chr4 31939684 C-T 0 0 Single Base Substitution 0 HET FN1686-S Chr4 33997299 G-T 0 0 Single Base Substitution 0 HET FN1686-S Chr5 15014899 15014900 0 0 Insertion 1 HET FN1686-S Chr5 17145918 17145919 0 0 Insertion 1 HET FN1686-S Chr5 21925318 21925321 0 0 Deletion 3 Homo FN1686-S Chr5 21929367 A-T 0 0 Single Base Substitution 0 Homo FN1686-S Chr5 21929368 A-T 0 0 Single Base Substitution 0 Homo FN1686-S Chr5 21929379 C-T 0 0 Single Base Substitution 0 Homo FN1686-S Chr5 23219934 Chr3 25528108 0 Translocation 0 FN1686-S Chr5 23219934 Chr3 25528108 0 Translocation 0 LOC_Os03g45210 2-aminoethanethiol dioxygenase, putative, expressed FN1686-S Chr5 23707047 G-T 0 0 Single Base Substitution 0 Homo FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51740 receptor protein kinase CLAVATA1 precursor, putative, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51750 aspartyl protease family protein, putative, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51754 expressed protein FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51780 zinc finger, C3HC4 type domain containing protein, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51790 RecF/RecN/SMC N terminal domain containing protein, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51800 peptidyl-tRNA hydrolase, mitochondrial precursor, putative, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51810 expressed protein FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51820 helix-loop-helix DNA-binding protein, putative, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51830 ZOS5-12 - C2H2 zinc finger protein, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51850 AT hook-containing DNA-binding protein, putative, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51860 expressed protein FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51870 ligA, putative, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51890 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51900 expressed protein FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51910 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51920 retrotransposon protein, putative, Ty3-gypsy subclass FN1686-S Chr5 29678001 29804000 0 0 Deletion 125999 LOC_Os05g51930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr5 29892001 29901000 0 0 Deletion 8999 LOC_Os05g52060 retrotransposon protein, putative, unclassified FN1686-S Chr5 29892001 29901000 0 0 Deletion 8999 LOC_Os05g52070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr6 15041005 C-A 0 0 Single Base Substitution 0 Homo FN1686-S Chr6 17191751 17192059 0 0 Inversion 0 FN1686-S Chr6 20564015 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g35270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18240 lectin-like receptor kinase, putative, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18250 expressed protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18260 hypothetical protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18270 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18280 retrotransposon protein, putative, unclassified FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18290 transposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18300 expressed protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18310 retrotransposon protein, putative, unclassified FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18320 retrotransposon protein, putative, unclassified FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18330 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18340 retrotransposon protein, putative, Ty3-gypsy subclass FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18380 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18390 retrotransposon protein, putative, unclassified FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18400 retrotransposon protein, putative, unclassified FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18410 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18420 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18440 retrotransposon protein, putative, Ty3-gypsy subclass FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18460 expressed protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18480 hypothetical protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18500 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18510 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18540 ribosomal RNA apurinic site specific lyase, putative, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18550 hypothetical protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18560 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18570 expressed protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18580 expressed protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18590 expressed protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18600 OsFBL37 - F-box domain and LRR containing protein, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18610 OsFBLD7 - F-box, LRR and FBD domain containing protein, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18630 expressed protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18640 retrotransposon protein, putative, unclassified FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18660 hypothetical protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18670 expressed protein FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18680 retrotransposon, putative, centromere-specific, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18690 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18700 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18710 OsFBLD8 - F-box, LRR and FBD domain containing protein, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18720 tetratricopeptide repeat containing protein, putative, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18750 LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18780 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18790 retrotransposon protein, putative, unclassified FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18800 retrotransposon protein, putative, unclassified FN1686-S Chr7 10811001 11140000 0 0 Deletion 328999 LOC_Os07g18810 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 11155021 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g18840 transposon protein, putative, unclassified, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19250 transposon protein, putative, unclassified FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19274 retrotransposon protein, putative, Ty3-gypsy subclass FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19290 expressed protein FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19310 hypothetical protein FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19320 stripe rust resistance protein Yr10, putative, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19330 expressed protein FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19340 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19350 hypothetical protein FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19360 retrotransposon protein, putative, Ty3-gypsy subclass FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19390 UBX domain-containing protein, putative, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19400 pentatricopeptide domain containing protein, putative, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19410 expressed protein FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19420 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19430 retrotransposon protein, putative, unclassified FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19444 regulatory protein, putative, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19460 mitochondrial carrier protein, putative, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19470 uncharacterized ACR, YggU family COG1872 containing protein, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19480 expressed protein FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19494 expressed protein FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19510 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr7 11401001 11548000 0 0 Deletion 146999 LOC_Os07g19520 expressed protein FN1686-S Chr7 12986790 G-C 0 0 Single Base Substitution 0 HET FN1686-S Chr7 1308316 1308322 0 0 Insertion 6 HET FN1686-S Chr7 13632673 C-T 0 0 Single Base Substitution 0 HET FN1686-S Chr7 3852334 T-G 0 0 Single Base Substitution 0 HET FN1686-S Chr7 794170 C-A 0 0 Single Base Substitution 0 HET FN1686-S Chr8 18906559 18906560 0 0 Deletion 1 frameshift_variant Homo LOC_Os08g30670 retrotransposon protein, putative, unclassified, expressed FN1686-S Chr8 22732809 22732811 0 0 Insertion 2 HET FN1686-S Chr8 2629601 A-T 0 0 Single Base Substitution 0 Homo FN1686-S Chr8 28220186 G-T 0 0 Single Base Substitution 0 HET FN1686-S Chr8 28220187 C-T 0 0 Single Base Substitution 0 HET FN1686-S Chr8 6551618 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g11150 retrotransposon protein, putative, unclassified, expressed