FN1704-S Chr1 11610214 11610716 0 0 Inversion 0 FN1704-S Chr1 13467976 G-A 0 0 Single Base Substitution 0 Homo FN1704-S Chr1 20040811 T-G 0 0 Single Base Substitution 0 HET FN1704-S Chr1 21469898 21470020 0 0 Inversion 0 FN1704-S Chr1 21712050 21712327 0 0 Inversion 0 FN1704-S Chr1 23747284 23747538 0 0 Inversion 0 LOC_Os01g41890 MLA1, putative, expressed FN1704-S Chr1 23862630 23862706 0 0 Deletion 76 HET FN1704-S Chr1 26237448 C-A 0 0 Single Base Substitution 0 HET FN1704-S Chr1 31034252 31034541 0 0 Inversion 0 FN1704-S Chr1 32100807 A-T 0 0 Single Base Substitution 0 HET FN1704-S Chr1 34224021 34224023 0 0 Insertion 2 HET FN1704-S Chr1 34457046 34457416 0 0 Inversion 0 FN1704-S Chr1 3943093 3943206 0 0 Inversion 0 FN1704-S Chr1 41066308 41066518 0 0 Inversion 0 LOC_Os01g70940 potassium transporter, putative, expressed FN1704-S Chr1 42383399 42383400 0 0 Insertion 1 Homo FN1704-S Chr1 4302782 4303386 0 0 Inversion 0 FN1704-S Chr1 8985930 8985933 0 0 Insertion 3 HET FN1704-S Chr10 12407415 C-T 0 0 Single Base Substitution 0 Homo FN1704-S Chr10 13742240 G-A 0 0 Single Base Substitution 0 HET FN1704-S Chr10 22871579 22871714 0 0 Inversion 0 LOC_Os10g42439 heat shock protein DnaJ, putative, expressed FN1704-S Chr10 6144489 6144713 0 0 Inversion 0 FN1704-S Chr10 6144489 6144713 0 0 Inversion 0 LOC_Os10g11110 expressed protein FN1704-S Chr10 9329806 9330282 0 0 Inversion 0 FN1704-S Chr11 11179822 G-A 0 0 Single Base Substitution 0 Homo FN1704-S Chr11 13519944 Chr5 7847977 0 Translocation 0 FN1704-S Chr11 14778416 Chr8 985231 0 Translocation 0 FN1704-S Chr11 14778416 Chr8 985231 0 Translocation 0 LOC_Os08g02460 expressed protein FN1704-S Chr11 15696001 15733000 0 0 Deletion 36999 LOC_Os11g27280 transposon protein, putative, CACTA, En/Spm sub-class FN1704-S Chr11 15696001 15733000 0 0 Deletion 36999 LOC_Os11g27290 transposon protein, putative, CACTA, En/Spm sub-class FN1704-S Chr11 15696001 15733000 0 0 Deletion 36999 LOC_Os11g27300 expressed protein FN1704-S Chr11 15696001 15733000 0 0 Deletion 36999 LOC_Os11g27329 OsSCP62 - Putative Serine Carboxypeptidase homologue, expressed FN1704-S Chr11 19943510 G-A 0 0 Single Base Substitution 0 HET FN1704-S Chr11 23860910 23861019 0 0 Inversion 0 FN1704-S Chr11 2934450 2934641 0 0 Inversion 0 FN1704-S Chr11 8409654 8410027 0 0 Inversion 0 FN1704-S Chr12 16463528 16463714 0 0 Inversion 0 LOC_Os12g27930 expressed protein FN1704-S Chr12 19404054 Chr5 4369792 0 Translocation 0 FN1704-S Chr12 25582727 Chr5 17617492 0 Translocation 0 FN1704-S Chr12 25582727 Chr5 17617492 0 Translocation 0 LOC_Os05g30390 Os5bglu23 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, likely pseudogene in japonica, expressed FN1704-S Chr12 2627930 2628127 0 0 Inversion 0 FN1704-S Chr12 3637628 A-T 0 0 Single Base Substitution 0 HET FN1704-S Chr2 12170875 12171061 0 0 Inversion 0 LOC_Os02g20650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1704-S Chr2 1236189 1902274 0 0 Inversion 0 FN1704-S Chr2 1236222 1902278 0 0 Inversion 0 FN1704-S Chr2 14025523 14025719 0 0 Inversion 0 FN1704-S Chr2 14714368 14714550 0 0 Inversion 0 FN1704-S Chr2 15429295 15429529 0 0 Inversion 0 FN1704-S Chr2 2175276 2175505 0 0 Inversion 0 LOC_Os02g04760 cycloartenol synthase, putative, expressed FN1704-S Chr2 24837147 24837157 0 0 Deletion 10 Homo FN1704-S Chr2 2512167 2512423 0 0 Inversion 0 FN1704-S Chr2 29976584 C-T 0 0 Single Base Substitution 0 HET FN1704-S Chr2 32260158 32260303 0 0 Inversion 0 FN1704-S Chr2 32284162 32284469 0 0 Inversion 0 LOC_Os02g52800 OsMan03 - Endo-Beta-Mannanase, expressed FN1704-S Chr2 35307836 35308079 0 0 Inversion 0 LOC_Os02g57660 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed FN1704-S Chr2 7504218 A-G 0 0 Single Base Substitution 0 HET FN1704-S Chr3 16934121 G-A 0 0 Single Base Substitution 0 Homo FN1704-S Chr3 18641524 18641666 0 0 Inversion 0 LOC_Os03g32590 transcription initiation factor, putative, expressed FN1704-S Chr3 22695929 22696196 0 0 Inversion 0 LOC_Os03g40820 retrotransposon protein, putative, unclassified, expressed FN1704-S Chr3 24565676 24565901 0 0 Inversion 0 LOC_Os03g43820 plant invertase/pectin methylesterase inhibitor domain containing protein, expressed FN1704-S Chr3 27295303 C-T 0 0 Single Base Substitution 0 Homo FN1704-S Chr3 27947145 27947146 0 0 Deletion 1 Homo FN1704-S Chr3 30768804 G-A 0 0 Single Base Substitution 0 Homo FN1704-S Chr3 30779147 T-G 0 0 Single Base Substitution 0 Homo FN1704-S Chr3 524968 525118 0 0 Inversion 0 LOC_Os03g01870 no apical meristem protein, putative, expressed FN1704-S Chr3 6606580 T-G 0 0 Single Base Substitution 0 Homo FN1704-S Chr3 8910943 8911169 0 0 Inversion 0 LOC_Os03g16150 mannose-1-phosphate guanyltransferase, putative, expressed FN1704-S Chr4 10872357 10872571 0 0 Inversion 0 LOC_Os04g19520 retrotransposon protein, putative, Ty3-gypsy subclass FN1704-S Chr4 2668682 2668959 0 0 Inversion 0 LOC_Os04g05360 expressed protein FN1704-S Chr4 27738517 Chr3 2570590 0 Translocation 0 FN1704-S Chr4 32450477 32450544 0 0 Insertion 67 HET FN1704-S Chr4 32631724 T-A 0 0 Single Base Substitution 0 HET FN1704-S Chr4 4929662 4929672 0 0 Deletion 10 frameshift_variant Homo LOC_Os04g09270 retrotransposon protein, putative, unclassified, expressed FN1704-S Chr4 64641 64948 0 0 Inversion 0 LOC_Os04g01080 retrotransposon protein, putative, unclassified FN1704-S Chr5 17502971 17503280 0 0 Inversion 0 LOC_Os05g30200 expressed protein FN1704-S Chr5 17696680 17696956 0 0 Inversion 0 LOC_Os05g30535 hypothetical protein FN1704-S Chr5 19871481 19871484 0 0 Deletion 3 Homo FN1704-S Chr5 19941283 19941516 0 0 Inversion 0 FN1704-S Chr5 23653406 23653614 0 0 Inversion 0 LOC_Os05g40270 expressed protein FN1704-S Chr5 25798572 25798574 0 0 Deletion 2 HET FN1704-S Chr5 27400839 G-A 0 0 Single Base Substitution 0 Homo FN1704-S Chr5 4210369 4210536 0 0 Inversion 0 FN1704-S Chr6 10202507 10392598 0 0 Inversion 0 LOC_Os06g17580 expressed protein FN1704-S Chr6 13282738 13465968 0 0 Inversion 0 FN1704-S Chr6 13282738 13465968 0 0 Inversion 0 LOC_Os06g23090 retrotransposon protein, putative, unclassified, expressed FN1704-S Chr6 13283202 13465976 0 0 Inversion 0 FN1704-S Chr6 13283202 13465976 0 0 Inversion 0 LOC_Os06g23090 retrotransposon protein, putative, unclassified, expressed FN1704-S Chr6 22818941 G-A 0 0 Single Base Substitution 0 HET FN1704-S Chr6 29924051 29924162 0 0 Inversion 0 LOC_Os06g49380 NBS-LRR disease resistance protein, putative, expressed FN1704-S Chr6 3347030 C-T 0 0 Single Base Substitution 0 HET FN1704-S Chr6 6891491 6891758 0 0 Inversion 0 LOC_Os06g12630 glutathione S-transferase, N-terminal domain containing protein, expressed FN1704-S Chr7 11203831 T-C 0 0 Single Base Substitution 0 HET FN1704-S Chr7 13607276 13607392 0 0 Inversion 0 FN1704-S Chr7 17082002 Chr1 40520614 0 Translocation 0 FN1704-S Chr7 18226425 G-A 0 0 Single Base Substitution 0 Homo FN1704-S Chr7 19403409 19403578 0 0 Inversion 0 FN1704-S Chr7 19403409 19403578 0 0 Inversion 0 LOC_Os07g32550 dimethyladenosine transferase, putative, expressed FN1704-S Chr7 24785889 T-C 0 0 Single Base Substitution 0 Homo FN1704-S Chr7 3359126 3359598 0 0 Inversion 0 LOC_Os07g06870 hypothetical protein FN1704-S Chr7 5295527 Chr5 24669631 0 Translocation 0 FN1704-S Chr7 5501312 5501761 0 0 Inversion 0 LOC_Os07g10250 DEAD-box ATP-dependent RNA helicase 52B, putative, expressed FN1704-S Chr7 881314 Chr1 36962310 0 Translocation 0 LOC_Os07g02510 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1704-S Chr7 9747416 9747439 0 0 Deletion 23 HET FN1704-S Chr8 12078965 T-C 0 0 Single Base Substitution 0 Homo FN1704-S Chr8 13388098 Chr4 2808013 0 Translocation 0 FN1704-S Chr8 21895923 21895924 0 0 Insertion 1 HET FN1704-S Chr9 13474326 13474575 0 0 Inversion 0 FN1704-S Chr9 14407758 G-A 0 0 Single Base Substitution 0 HET FN1704-S Chr9 14741583 14741584 0 0 Deletion 1 frameshift_variant HET LOC_Os09g24740 retrotransposon protein, putative, unclassified, expressed FN1704-S Chr9 15900307 Chr6 25107112 0 Translocation 0 FN1704-S Chr9 17890348 17890350 0 0 Deletion 2 HET FN1704-S Chr9 21729820 21730244 0 0 Inversion 0 LOC_Os09g37700 proteophosphoglycan ppg4, putative, expressed FN1704-S Chr9 22896682 22896808 0 0 Inversion 0 FN1704-S Chr9 2589108 G-C 0 0 Single Base Substitution 0 Homo FN1704-S Chr9 9359184 9359186 0 0 Deletion 2 HET FN1704-S Chr9 936687 1316626 0 0 Inversion 0 FN1704-S Chr9 936697 Chr1 38317390 0 Translocation 0 FN1704-S Chr9 947916 Chr1 35897987 0 Translocation 0 LOC_Os01g62020 NAD dependent epimerase/dehydratase family domain containing protein, expressed FN1704-S Chr9 947916 Chr1 35897987 0 Translocation 0 LOC_Os09g02310 hypothetical protein FN1704-S Chr9 947923 1316634 0 0 Inversion 0 LOC_Os09g02310 hypothetical protein FN1704-S Chr9 9513480 9513657 0 0 Inversion 0