FN1737-S Chr1 24243844 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42620 pentatricopeptide containing protein, putative, expressed FN1737-S Chr1 28253484 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr1 29019533 29019609 0 0 Insertion 76 HET FN1737-S Chr1 31303814 31303815 0 0 Deletion 1 Homo FN1737-S Chr1 33099868 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g57280 rp1, putative, expressed FN1737-S Chr1 5665142 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr10 1157217 1157218 0 0 Deletion 1 HET FN1737-S Chr10 11619732 11619733 0 0 Deletion 1 HET FN1737-S Chr10 12147670 T-C 0 0 Single Base Substitution 0 HET FN1737-S Chr10 15399535 15399612 0 0 Insertion 77 HET FN1737-S Chr10 4089629 4089755 0 0 Deletion 126 HET FN1737-S Chr11 14886997 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr11 14886998 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr11 22222037 G-T 0 0 Single Base Substitution 0 HET FN1737-S Chr11 22767910 22767911 0 0 Insertion 1 HET FN1737-S Chr11 25032001 25049000 0 0 Deletion 16999 LOC_Os11g41690 retrotransposon protein, putative, unclassified, expressed FN1737-S Chr11 25032001 25049000 0 0 Deletion 16999 LOC_Os11g41700 transposon protein, putative, unclassified, expressed FN1737-S Chr11 25032001 25049000 0 0 Deletion 16999 LOC_Os11g41710 cytochrome P450, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41770 expressed protein FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41800 hypothetical protein FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41820 RNA recognition motif containing protein, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41830 proteophosphoglycan ppg4, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41840 transporter family protein, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41850 transporter family protein, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41860 OsFBX429 - F-box domain containing protein, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41870 transporter family protein, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41875 membrane protein, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41880 potyvirus VPg interacting protein, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41890 RNA recognition motif containing protein, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41900 acyltransferase, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41910 GTP-binding protein, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41920 expressed protein FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41940 expressed protein FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41950 expressed protein FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41960 hypothetical protein FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41970 hypothetical protein FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g41990 armadillo/beta-catenin-like repeat family protein, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g42000 FRA10AC1, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g42010 NBS-LRR type disease resistance protein, putative, expressed FN1737-S Chr11 25078001 25272000 0 0 Deletion 193999 LOC_Os11g42020 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42200 laccase precursor protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42210 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42220 laccase precursor protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42230 OsFBX430 - F-box domain containing protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42240 OsFBX431 - F-box domain containing protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42270 OsFBX432 - F-box domain containing protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42280 OsFBX433 - F-box domain containing protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42290 transferase family protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42300 OsFBX434 - F-box domain containing protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42310 OsFBL58 - F-box domain and LRR containing protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42330 retrotransposon protein, putative, Ty3-gypsy subclass FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42340 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42350 glutathione synthetase, chloroplast precursor, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42360 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42370 transferase family protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42380 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42390 OsSCP64 - Putative Serine Carboxypeptidase homologue, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42400 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42410 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42420 nuclear pore protein 84/107 containing protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42430 transporter family protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42440 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42450 leucine-rich repeat family protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42470 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42480 transferase family domain containing protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42490 retrotransposon protein, putative, unclassified, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42500 dirigent, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42510 tyrosine aminotransferase, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42520 DEFL34 - Defensin and Defensin-like DEFL family, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42525 hypothetical protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42530 DEFL25 - Defensin and Defensin-like DEFL family FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42540 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42550 dirigent, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42570 NBS-LRR type disease resistance protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42580 Leucine Rich Repeat family protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42590 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42660 Leucine Rich Repeat family protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42680 NBS-LRR type disease resistance protein, putative FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42690 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42700 NBS-LRR type disease resistance protein, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42710 retrotransposon protein, putative, unclassified, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42720 retrotransposon protein, putative, unclassified, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42730 lipase class 3, putative, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42740 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42750 retrotransposon protein, putative, unclassified, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42760 expressed protein FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42770 Leucine Rich Repeat family protein, expressed FN1737-S Chr11 25416001 25766000 0 0 Deletion 349999 LOC_Os11g42780 transposon protein, putative, unclassified, expressed FN1737-S Chr11 3546874 T-A 0 0 Single Base Substitution 0 Homo FN1737-S Chr11 3546876 T-A 0 0 Single Base Substitution 0 Homo FN1737-S Chr11 3546879 T-A 0 0 Single Base Substitution 0 Homo FN1737-S Chr12 15098290 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr12 1803336 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04260 astaxanthin synthase KC28, putative, expressed FN1737-S Chr12 1803337 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04260 astaxanthin synthase KC28, putative, expressed FN1737-S Chr12 23096761 A-T 0 0 Single Base Substitution 0 Homo FN1737-S Chr12 25194111 Chr8 11496200 0 Translocation 0 LOC_Os08g19220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1737-S Chr12 25194111 Chr8 11496200 0 Translocation 0 LOC_Os12g40700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1737-S Chr12 25376031 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g41000 retrotransposon protein, putative, unclassified, expressed FN1737-S Chr2 10401778 T-A 0 0 Single Base Substitution 0 Homo FN1737-S Chr2 13884176 G-A 0 0 Single Base Substitution 0 Homo FN1737-S Chr2 15964478 15964489 0 0 Deletion 11 frameshift_variant HET LOC_Os02g27130 expressed protein FN1737-S Chr2 21417901 21417902 0 0 Deletion 1 Homo FN1737-S Chr2 23606543 23606726 0 0 Inversion 0 LOC_Os02g39080 expressed protein FN1737-S Chr2 27580454 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g45370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr2 4213916 A-G 0 0 Single Base Substitution 0 HET FN1737-S Chr2 5663819 5818105 0 0 Inversion 0 LOC_Os02g10740 calcium-binding mitochondrial carrier CBG00135, putative, expressed FN1737-S Chr2 5663819 5818105 0 0 Inversion 0 LOC_Os02g10950 expressed protein FN1737-S Chr2 5663826 5818113 0 0 Inversion 0 LOC_Os02g10740 calcium-binding mitochondrial carrier CBG00135, putative, expressed FN1737-S Chr2 5663826 5818113 0 0 Inversion 0 LOC_Os02g10950 expressed protein FN1737-S Chr2 7566517 C-A 0 0 Single Base Substitution 0 HET FN1737-S Chr2 7763986 8070321 0 0 Inversion 0 FN1737-S Chr2 7763986 8070321 0 0 Inversion 0 LOC_Os02g14620 retrotransposon protein, putative, unclassified FN1737-S Chr2 7764001 7798000 0 0 Deletion 33999 LOC_Os02g14180 peroxidase precursor, putative, expressed FN1737-S Chr2 7764001 7798000 0 0 Deletion 33999 LOC_Os02g14190 spermidine synthase, putative, expressed FN1737-S Chr2 7764001 7798000 0 0 Deletion 33999 LOC_Os02g14210 retrotransposon protein, putative, unclassified, expressed FN1737-S Chr2 7764001 7798000 0 0 Deletion 33999 LOC_Os02g14220 retrotransposon protein, putative, unclassified, expressed FN1737-S Chr2 7764001 7798000 0 0 Deletion 33999 LOC_Os02g14230 expressed protein FN1737-S Chr2 7798587 8070337 0 0 Inversion 0 FN1737-S Chr2 7798587 8070337 0 0 Inversion 0 LOC_Os02g14620 retrotransposon protein, putative, unclassified FN1737-S Chr2 7922833 7922834 0 0 Deletion 1 Homo FN1737-S Chr2 928490 A-G 0 0 Single Base Substitution 0 Homo FN1737-S Chr3 1411200 Chr2 16564865 0 Translocation 0 LOC_Os03g03290 receptor-like protein kinase At3g46290 precursor, putative, expressed FN1737-S Chr3 1411236 Chr2 16571156 0 Translocation 0 LOC_Os03g03290 receptor-like protein kinase At3g46290 precursor, putative, expressed FN1737-S Chr3 17724083 17724090 0 0 Deletion 7 HET FN1737-S Chr3 2655683 C-G 0 0 Single Base Substitution 0 HET FN1737-S Chr3 28268515 G-A 0 0 Single Base Substitution 0 HET FN1737-S Chr3 7456805 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr4 11507508 11507512 0 0 Deletion 4 Homo FN1737-S Chr4 12858536 13797159 0 0 Inversion 0 LOC_Os04g22690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr4 12858536 13797159 0 0 Inversion 0 LOC_Os04g24130 expressed protein FN1737-S Chr4 12858815 13797190 0 0 Inversion 0 LOC_Os04g22690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr4 12858815 13797190 0 0 Inversion 0 LOC_Os04g24130 expressed protein FN1737-S Chr4 16954093 16954102 0 0 Deletion 9 HET FN1737-S Chr4 19044779 19044884 0 0 Inversion 0 LOC_Os04g31804 OsMADS64 - MADS-box family gene with M-alpha type-box, expressed FN1737-S Chr4 20146712 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr4 8104219 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g14490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1737-S Chr5 20559590 G-T 0 0 Single Base Substitution 0 HET FN1737-S Chr5 3987987 A-C 0 0 Single Base Substitution 0 Homo FN1737-S Chr5 7263194 7263195 0 0 Deletion 1 HET FN1737-S Chr6 12189493 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr6 26744083 26744084 0 0 Deletion 1 HET FN1737-S Chr6 29131839 G-A 0 0 Single Base Substitution 0 HET FN1737-S Chr6 5285847 5285859 0 0 Deletion 12 stop_gained&disruptive_inframe_deletion HET LOC_Os06g10280 CDP-alcohol phosphatidyltransferase, putative, expressed FN1737-S Chr6 6708126 A-T 0 0 Single Base Substitution 0 HET FN1737-S Chr6 8937569 9029717 0 0 Inversion 0 LOC_Os06g15750 NB-ARC domain containing protein, expressed FN1737-S Chr6 8937584 9029726 0 0 Inversion 0 LOC_Os06g15750 NB-ARC domain containing protein, expressed FN1737-S Chr7 10222991 10222992 0 0 Deletion 1 Homo FN1737-S Chr7 11208368 G-A 0 0 Single Base Substitution 0 Homo FN1737-S Chr7 19671630 19671632 0 0 Deletion 2 HET FN1737-S Chr7 2095462 2095463 0 0 Deletion 1 HET FN1737-S Chr7 25303821 G-A 0 0 Single Base Substitution 0 HET FN1737-S Chr7 29530802 29530820 0 0 Deletion 18 HET FN1737-S Chr8 11774021 C-T 0 0 Single Base Substitution 0 Homo FN1737-S Chr8 2503356 2503358 0 0 Deletion 2 Homo FN1737-S Chr8 5194750 G-A 0 0 Single Base Substitution 0 Homo FN1737-S Chr9 13835888 G-A 0 0 Single Base Substitution 0 HET FN1737-S Chr9 15733328 G-A 0 0 Single Base Substitution 0 HET FN1737-S Chr9 4477862 C-T 0 0 Single Base Substitution 0 HET FN1737-S Chr9 9744082 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os09g15950 expressed protein