FN1754-S Chr1 18133732 T-A 0 0 Single Base Substitution 0 HET FN1754-S Chr1 201752 202060 0 0 Inversion 0 FN1754-S Chr1 201752 202060 0 0 Inversion 0 LOC_Os01g01400 expressed protein FN1754-S Chr1 26418151 G-A 0 0 Single Base Substitution 0 HET FN1754-S Chr1 9185086 9185088 0 0 Insertion 2 HET FN1754-S Chr10 19806358 T-G 0 0 Single Base Substitution 0 HET FN1754-S Chr10 22675858 22675859 0 0 Insertion 1 HET FN1754-S Chr10 3190532 3190533 0 0 Insertion 1 HET FN1754-S Chr10 701702 701703 0 0 Deletion 1 HET FN1754-S Chr10 8548769 G-A 0 0 Single Base Substitution 0 HET FN1754-S Chr11 13046725 C-T 0 0 Single Base Substitution 0 HET FN1754-S Chr11 15483634 T-C 0 0 Single Base Substitution 0 HET FN1754-S Chr11 18197484 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g31220 transposon protein, putative, unclassified, expressed FN1754-S Chr11 25301253 25301484 0 0 Inversion 0 FN1754-S Chr11 8688934 C-G 0 0 Single Base Substitution 0 HET FN1754-S Chr11 9676482 Chr4 7094370 0 Translocation 0 LOC_Os11g17360 expressed protein FN1754-S Chr12 21058683 C-A 0 0 Single Base Substitution 0 HET FN1754-S Chr12 26524292 27365191 0 0 Inversion 0 LOC_Os12g42690 retrotransposon protein, putative, unclassified, expressed FN1754-S Chr12 26524314 27365244 0 0 Inversion 0 LOC_Os12g42690 retrotransposon protein, putative, unclassified, expressed FN1754-S Chr12 27106142 Chr6 28768100 0 Translocation 0 FN1754-S Chr12 5177178 5178097 0 0 Deletion 919 HET FN1754-S Chr12 5446201 G-A 0 0 Single Base Substitution 0 HET FN1754-S Chr2 18869606 C-T 0 0 Single Base Substitution 0 HET FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33510 retrotransposon protein, putative, Ty3-gypsy subclass FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33520 retrotransposon protein, putative, unclassified, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33530 retrotransposon protein, putative, unclassified, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33540 translational activator family protein, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33550 harpin-induced protein 1 domain containing protein, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33560 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33570 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33580 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33590 U-box domain-containing protein, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33600 VQ domain containing protein, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33610 metallo-beta-lactamase, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33620 retrotransposon protein, putative, unclassified, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33630 WD domain, G-beta repeat domain containing protein, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33640 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33650 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33660 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33670 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33680 U-box domain containing protein, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33690 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33700 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33705 expressed protein FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33710 decarboxylase, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33720 RING-H2 finger protein, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33730 ubiquinol-cytochrome C reductase hinge protein, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33740 GPI-anchored protein, putative, expressed FN1754-S Chr2 19931001 20141000 0 0 Deletion 209999 LOC_Os02g33750 transposon protein, putative, unclassified, expressed FN1754-S Chr2 24906512 C-T 0 0 Single Base Substitution 0 Homo FN1754-S Chr2 34282939 C-T 0 0 Single Base Substitution 0 Homo FN1754-S Chr2 5504339 A-T 0 0 Single Base Substitution 0 HET FN1754-S Chr2 5533262 5533509 0 0 Inversion 0 LOC_Os02g10520 OsSub12 - Putative Subtilisin homologue, expressed FN1754-S Chr2 5696555 A-C 0 0 Single Base Substitution 0 HET FN1754-S Chr2 6430403 6430406 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os02g12350 histone deacetylase, putative, expressed FN1754-S Chr3 22651767 23614867 0 0 Inversion 0 LOC_Os03g40720 UDP-glucose 6-dehydrogenase, putative, expressed FN1754-S Chr3 22651767 23614867 0 0 Inversion 0 LOC_Os03g42430 B3 DNA binding domain containing protein, expressed FN1754-S Chr3 22651790 23614886 0 0 Inversion 0 LOC_Os03g40720 UDP-glucose 6-dehydrogenase, putative, expressed FN1754-S Chr3 22651790 23614886 0 0 Inversion 0 LOC_Os03g42430 B3 DNA binding domain containing protein, expressed FN1754-S Chr3 22820923 C-T 0 0 Single Base Substitution 0 HET FN1754-S Chr3 23285253 23285254 0 0 Deletion 1 frameshift_variant HET LOC_Os03g41920 expressed protein FN1754-S Chr3 31552236 31552238 0 0 Insertion 2 HET FN1754-S Chr3 34869536 34869868 0 0 Inversion 0 FN1754-S Chr3 6431764 A-T 0 0 Single Base Substitution 0 HET FN1754-S Chr3 6583205 T-C 0 0 Single Base Substitution 0 HET FN1754-S Chr3 79907 80327 0 0 Inversion 0 LOC_Os03g01110 RNA methyltransferase, TrmH family protein, putative, expressed FN1754-S Chr4 11635791 T-C 0 0 Single Base Substitution 0 Homo FN1754-S Chr4 11860846 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g21100 retrotransposon protein, putative, unclassified, expressed FN1754-S Chr4 23198936 23199149 0 0 Inversion 0 FN1754-S Chr4 6133919 6134160 0 0 Inversion 0 FN1754-S Chr4 814055 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g02320 retrotransposon protein, putative, Ty1-copia subclass FN1754-S Chr5 19781880 19781886 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os05g33630 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed FN1754-S Chr5 20051022 20051302 0 0 Inversion 0 FN1754-S Chr5 28225207 28225404 0 0 Inversion 0 LOC_Os05g49180 protein of unknown function DUF1296 domain containing protein, expressed FN1754-S Chr5 3759818 3760184 0 0 Inversion 0 FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33620 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33630 retrotransposon protein, putative, Ty3-gypsy subclass FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33640 CAPIP1, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33650 hypothetical protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33660 hypothetical protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33680 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33690 CAPIP1, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33700 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33710 spermidine synthase, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33720 flavin-containing monooxygenase family protein, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33730 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33759 retrotransposon protein, putative, unclassified FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33770 retrotransposon, putative, centromere-specific FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33780 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33790 hypothetical protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33800 hypothetical protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33810 zinc finger protein, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33830 transposon protein, putative, CACTA, En/Spm sub-class FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33850 retrotransposon protein, putative, unclassified FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33860 retrotransposon protein, putative, unclassified, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33870 transposon protein, putative, CACTA, En/Spm sub-class FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33880 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33910 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33930 Divergent PAP2 family domain containing protein, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33940 NAC domain containing protein, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33970 VQ domain containing protein, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33980 tRNA-splicing endonuclease subunit Sen2, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g33990 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g34000 transposon protein, putative, CACTA, En/Spm sub-class FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g34010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g34020 glycosyl hydrolases family 17, putative, expressed FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g34030 expressed protein FN1754-S Chr6 19577001 19825000 0 0 Deletion 247999 LOC_Os06g34040 DJ-1 family protein, putative, expressed FN1754-S Chr6 28767883 C-T 0 0 Single Base Substitution 0 HET FN1754-S Chr7 13145644 G-C 0 0 Single Base Substitution 0 HET FN1754-S Chr7 16535241 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g28320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1754-S Chr7 18408545 G-A 0 0 Single Base Substitution 0 HET FN1754-S Chr7 19792194 G-A 0 0 Single Base Substitution 0 Homo FN1754-S Chr7 20426070 A-T 0 0 Single Base Substitution 0 HET FN1754-S Chr7 8775431 G-A 0 0 Single Base Substitution 0 HET FN1754-S Chr8 12140622 12140786 0 0 Inversion 0 FN1754-S Chr8 17299048 17299138 0 0 Deletion 90 HET FN1754-S Chr8 17421951 A-G 0 0 Single Base Substitution 0 HET FN1754-S Chr8 23817710 A-G 0 0 Single Base Substitution 0 Homo FN1754-S Chr8 5747577 5747964 0 0 Inversion 0 LOC_Os08g09940 GTP-binding protein, putative, expressed FN1754-S Chr9 10980646 C-A 0 0 Single Base Substitution 0 HET FN1754-S Chr9 21356929 G-T 0 0 Single Base Substitution 0 HET FN1754-S Chr9 21923752 G-C 0 0 Single Base Substitution 0 HET FN1754-S Chr9 6535410 6535411 0 0 Insertion 1 HET FN1754-S Chr9 664048 A-G 0 0 Single Base Substitution 0 HET FN1754-S Chr9 6695975 6695977 0 0 Insertion 2 HET