FN2080-S Chr1 13232029 G-C 0 0 Single Base Substitution 0 HET FN2080-S Chr1 27428083 27428084 0 0 Deletion 1 HET FN2080-S Chr1 31378079 T-G 0 0 Single Base Substitution 0 HET FN2080-S Chr1 32153541 T-C 0 0 Single Base Substitution 0 HET FN2080-S Chr1 39528244 A-C 0 0 Single Base Substitution 0 HET FN2080-S Chr1 5439574 T-A 0 0 Single Base Substitution 0 Homo FN2080-S Chr11 13903289 13903291 0 0 Deletion 2 HET FN2080-S Chr11 1485259 1485398 0 0 Inversion 0 LOC_Os11g03780 alpha-N-arabinofuranosidase, putative, expressed FN2080-S Chr11 15116921 Chr4 16850716 0 Translocation 0 FN2080-S Chr11 15116921 Chr4 16850716 0 Translocation 0 LOC_Os04g28460 phospholipid-transporting ATPase 2, putative, expressed FN2080-S Chr11 15119400 Chr4 16850755 0 Translocation 0 FN2080-S Chr11 15119400 Chr4 16850755 0 Translocation 0 LOC_Os04g28460 phospholipid-transporting ATPase 2, putative, expressed FN2080-S Chr11 17434917 18207873 0 0 Inversion 0 LOC_Os11g29990 NBS-LRR type disease resistance protein, putative, expressed FN2080-S Chr11 17538825 Chr2 21868990 0 Translocation 0 LOC_Os02g36230 transposon protein, putative, unclassified, expressed FN2080-S Chr11 17538825 Chr2 21868990 0 Translocation 0 LOC_Os11g30170 transposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30650 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30660 conserved hypothetical protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30670 retrotransposon protein, putative, LINE subclass, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30690 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30700 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30720 conserved hypothetical protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30750 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30760 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30770 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30780 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30790 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30810 sulfotransferase domain containing protein, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30820 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30830 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30840 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30850 retrotransposon protein, putative, Ty3-gypsy subclass FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30880 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30910 sulfotransferase domain containing protein, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30920 transposon protein, putative, Mariner sub-class FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30930 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30940 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30950 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30960 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30970 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30980 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g30990 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g31000 expressed protein FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g31010 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr11 17839001 18052000 0 0 Deletion 212999 LOC_Os11g31020 transposon protein, putative, Pong sub-class, expressed FN2080-S Chr11 17937586 Chr6 7278777 0 Translocation 0 LOC_Os06g13240 BURP domain containing protein, expressed FN2080-S Chr11 17937586 Chr6 7278777 0 Translocation 0 LOC_Os11g30790 expressed protein FN2080-S Chr11 18052435 Chr2 21869033 0 Translocation 0 LOC_Os02g36230 transposon protein, putative, unclassified, expressed FN2080-S Chr11 18052435 Chr2 21869033 0 Translocation 0 LOC_Os11g31030 expressed protein FN2080-S Chr11 18208023 Chr6 25663354 0 Translocation 0 FN2080-S Chr11 22062022 22062026 0 0 Deletion 4 Homo FN2080-S Chr11 24669461 A-G 0 0 Single Base Substitution 0 HET FN2080-S Chr11 24942324 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41580 transposon protein, putative, unclassified, expressed FN2080-S Chr11 4455077 4455351 0 0 Inversion 0 FN2080-S Chr11 7144791 A-G 0 0 Single Base Substitution 0 HET FN2080-S Chr12 13244419 Chr6 18212923 0 Translocation 0 FN2080-S Chr12 17675953 G-A 0 0 Single Base Substitution 0 Homo FN2080-S Chr12 23132001 23146000 0 0 Deletion 13999 LOC_Os12g37690 MYB family transcription factor, putative, expressed FN2080-S Chr12 23202663 C-T 0 0 Single Base Substitution 0 HET FN2080-S Chr12 2363959 Chr9 21264758 0 Translocation 0 FN2080-S Chr12 27449942 A-G 0 0 Single Base Substitution 0 HET FN2080-S Chr2 10062448 10062449 0 0 Deletion 1 HET FN2080-S Chr2 12695254 C-T 0 0 Single Base Substitution 0 HET FN2080-S Chr2 14348740 T-C 0 0 Single Base Substitution 0 HET FN2080-S Chr2 2474775 3391978 0 0 Inversion 0 LOC_Os02g05180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr2 2474780 3391980 0 0 Inversion 0 LOC_Os02g05180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr2 31373358 31477337 0 0 Inversion 0 FN2080-S Chr2 31373358 31477337 0 0 Inversion 0 LOC_Os02g51400 AAA family ATPase, putative, expressed FN2080-S Chr2 31373359 31477359 0 0 Inversion 0 FN2080-S Chr2 31373359 31477359 0 0 Inversion 0 LOC_Os02g51400 AAA family ATPase, putative, expressed FN2080-S Chr2 4527017 G-A 0 0 Single Base Substitution 0 HET FN2080-S Chr2 4580644 A-G 0 0 Single Base Substitution 0 HET FN2080-S Chr2 6769629 C-A 0 0 Single Base Substitution 0 HET FN2080-S Chr3 16359854 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g28400 transport protein particle component, Bet3, domain containing protein, expressed FN2080-S Chr3 23221748 23222016 0 0 Inversion 0 LOC_Os03g41820 expressed protein FN2080-S Chr3 7914700 T-A 0 0 Single Base Substitution 0 HET FN2080-S Chr3 9151110 9151346 0 0 Inversion 0 FN2080-S Chr4 1255020 1255021 0 0 Deletion 1 HET FN2080-S Chr4 15916543 G-C 0 0 Single Base Substitution 0 HET FN2080-S Chr4 16006377 16006378 0 0 Deletion 1 HET FN2080-S Chr4 16999862 T-G 0 0 Single Base Substitution 0 HET FN2080-S Chr4 2072001 2085000 0 0 Deletion 12999 LOC_Os04g04390 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04574 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04600 retrotransposon protein, putative, Ty3-gypsy subclass FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04610 retrotransposon protein, putative, Ty3-gypsy subclass FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04620 retrotransposon protein, putative, Ty3-gypsy subclass FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04640 decarboxylase, putative, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04650 hypothetical protein FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04660 expressed protein FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04670 protein kinase, putative, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04680 expressed protein FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04690 legume lectins beta domain containing protein, putative FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04700 retrotransposon protein, putative, unclassified FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04710 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04720 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04730 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04740 expressed protein FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04750 peroxidase precursor, putative, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04770 legume lectins beta domain containing protein, putative, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04780 hypothetical protein FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04790 expressed protein FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04800 protein kinase domain containing protein, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04810 retrotransposon protein, putative, Ty3-gypsy subclass FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04820 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04830 retrotransposon protein, putative, unclassified FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04840 retrotransposon protein, putative, unclassified FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04850 retrotransposon protein, putative, Ty3-gypsy subclass FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04870 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2177001 2356000 0 0 Deletion 178999 LOC_Os04g04880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04914 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04930 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04940 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04950 copper methylamine oxidase precursor, putative, expressed FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04970 expressed protein FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04980 pyridoxal-dependent decarboxylase protein, putative, expressed FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04999 expressed protein FN2080-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g05010 CBS domain containing membrane protein, putative, expressed FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05030 serine-rich 25 kDa antigen protein, putative, expressed FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05040 transposon protein, putative, unclassified, expressed FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05050 pectate lyase precursor, putative, expressed FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05060 cytochrome P450 94A1, putative, expressed FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05070 expressed protein FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05080 vacuolar ATP synthase subunit F, putative, expressed FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05090 expressed protein FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05104 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05130 retrotransposon protein, putative, unclassified FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05140 retrotransposon protein, putative, unclassified FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05150 retrotransposon protein, putative, unclassified FN2080-S Chr4 2439001 2569000 0 0 Deletion 129999 LOC_Os04g05160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05180 retrotransposon protein, putative, unclassified FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05220 retrotransposon protein, putative, Ty3-gypsy subclass FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05230 conserved hypothetical protein FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05240 retrotransposon protein, putative, unclassified FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05250 PE-PGRS family protein, putative, expressed FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05260 retrotransposon protein, putative, unclassified FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05270 retrotransposon protein, putative, unclassified FN2080-S Chr4 2585001 2631000 0 0 Deletion 45999 LOC_Os04g05280 transposon protein, putative, unclassified, expressed FN2080-S Chr4 2798908 2798910 0 0 Insertion 2 HET FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05650 expressed protein FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05700 expressed protein FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05720 transposon protein, putative, CACTA, En/Spm sub-class FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2080-S Chr4 2878001 2950000 0 0 Deletion 71999 LOC_Os04g05750 expressed protein FN2080-S Chr4 360892 1145481 0 0 Inversion 0 FN2080-S Chr4 6322843 G-A 0 0 Single Base Substitution 0 HET FN2080-S Chr4 6322844 T-A 0 0 Single Base Substitution 0 HET FN2080-S Chr4 9384298 G-A 0 0 Single Base Substitution 0 HET FN2080-S Chr4 9384299 A-C 0 0 Single Base Substitution 0 HET FN2080-S Chr5 1148625 Chr2 25364403 0 Translocation 0 FN2080-S Chr5 1148633 Chr2 25364268 0 Translocation 0 FN2080-S Chr5 20461634 20461638 0 0 Insertion 4 HET FN2080-S Chr5 26216254 T-C 0 0 Single Base Substitution 0 HET FN2080-S Chr5 29119186 29119187 0 0 Deletion 1 HET FN2080-S Chr5 3448903 3448913 0 0 Deletion 10 HET FN2080-S Chr5 470012 G-A 0 0 Single Base Substitution 0 Homo FN2080-S Chr6 15671998 T-C 0 0 Single Base Substitution 0 HET FN2080-S Chr6 17874598 17874928 0 0 Inversion 0 FN2080-S Chr6 20714236 G-A 0 0 Single Base Substitution 0 HET FN2080-S Chr6 25216196 T-C 0 0 Single Base Substitution 0 HET FN2080-S Chr6 630575 630576 0 0 Insertion 1 HET FN2080-S Chr7 10842949 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g18300 expressed protein FN2080-S Chr7 13683830 C-T 0 0 Single Base Substitution 0 HET FN2080-S Chr7 16525832 T-C 0 0 Single Base Substitution 0 Homo FN2080-S Chr7 18712756 T-A 0 0 Single Base Substitution 0 Homo FN2080-S Chr7 19157418 19157439 0 0 Deletion 21 HET FN2080-S Chr7 19189721 19189722 0 0 Deletion 1 Homo FN2080-S Chr7 19420548 C-T 0 0 Single Base Substitution 0 Homo FN2080-S Chr7 19463606 19463625 0 0 Deletion 19 frameshift_variant HET LOC_Os07g32630 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN2080-S Chr7 19708927 A-T 0 0 Single Base Substitution 0 Homo FN2080-S Chr7 6966125 C-A 0 0 Single Base Substitution 0 HET FN2080-S Chr7 8306434 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g14560 retrotransposon protein, putative, unclassified, expressed FN2080-S Chr8 15502460 15502622 0 0 Inversion 0 LOC_Os08g25470 expressed protein FN2080-S Chr8 16212030 16212032 0 0 Insertion 2 HET FN2080-S Chr9 11203382 T-A 0 0 Single Base Substitution 0 HET FN2080-S Chr9 16653800 16653806 0 0 Deletion 6 HET FN2080-S Chr9 2030486 2030490 0 0 Deletion 4 HET FN2080-S Chr9 22158640 C-A 0 0 Single Base Substitution 0 HET FN2080-S Chr9 3300834 G-A 0 0 Single Base Substitution 0 HET FN2080-S Chr9 7057744 A-G 0 0 Single Base Substitution 0 Homo FN2080-S Chr9 8046751 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g13740 SET domain containing protein, expressed