FN2116-S Chr1 1092390 1092391 0 0 Deletion 1 HET FN2116-S Chr1 1101112 1101116 0 0 Deletion 4 HET FN2116-S Chr1 36897792 C-T 0 0 Single Base Substitution 0 HET FN2116-S Chr1 42615718 42615719 0 0 Deletion 1 frameshift_variant Homo LOC_Os01g73550 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed FN2116-S Chr1 42905345 C-G 0 0 Single Base Substitution 0 Homo FN2116-S Chr1 4725323 A-C 0 0 Single Base Substitution 0 Homo FN2116-S Chr10 1140981 A-T 0 0 Single Base Substitution 0 HET FN2116-S Chr10 15621383 15621385 0 0 Insertion 2 HET FN2116-S Chr10 1769930 C-A 0 0 Single Base Substitution 0 HET FN2116-S Chr10 18941317 C-T 0 0 Single Base Substitution 0 Homo FN2116-S Chr10 18986169 18986170 0 0 Insertion 1 HET FN2116-S Chr10 3205060 3205063 0 0 Insertion 3 HET FN2116-S Chr10 4600789 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g08474 cytochrome P450, putative, expressed FN2116-S Chr10 7904602 C-T 0 0 Single Base Substitution 0 HET FN2116-S Chr11 11783719 C-T 0 0 Single Base Substitution 0 HET FN2116-S Chr11 13433366 T-A 0 0 Single Base Substitution 0 Homo FN2116-S Chr11 16885490 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g29130 expressed protein FN2116-S Chr11 17979154 T-C 0 0 Single Base Substitution 0 Homo FN2116-S Chr11 22925995 22925997 0 0 Insertion 2 HET FN2116-S Chr11 28708135 A-C 0 0 Single Base Substitution 0 HET FN2116-S Chr11 4780578 4780581 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os11g09000 transposon protein, putative, unclassified FN2116-S Chr11 5391942 5407882 0 0 Inversion 0 FN2116-S Chr11 5391956 5407906 0 0 Inversion 0 FN2116-S Chr12 16230328 C-T 0 0 Single Base Substitution 0 HET FN2116-S Chr12 1898014 C-T 0 0 Single Base Substitution 0 Homo FN2116-S Chr12 21003017 C-T 0 0 Single Base Substitution 0 HET FN2116-S Chr12 6752423 6752424 0 0 Insertion 1 HET FN2116-S Chr2 10052872 G-A 0 0 Single Base Substitution 0 Homo FN2116-S Chr3 17368645 17368650 0 0 Deletion 5 HET FN2116-S Chr3 17458262 17458271 0 0 Deletion 9 Homo FN2116-S Chr3 24164899 A-T 0 0 Single Base Substitution 0 HET FN2116-S Chr4 12719547 G-A 0 0 Single Base Substitution 0 HET FN2116-S Chr4 13773155 13773159 0 0 Insertion 4 HET FN2116-S Chr4 26105651 A-T 0 0 Single Base Substitution 0 HET FN2116-S Chr4 26105652 A-T 0 0 Single Base Substitution 0 HET FN2116-S Chr4 26105653 C-T 0 0 Single Base Substitution 0 HET FN2116-S Chr4 27892221 27892229 0 0 Deletion 8 HET FN2116-S Chr4 31354237 31354238 0 0 Insertion 1 HET FN2116-S Chr4 33374096 33374110 0 0 Deletion 14 HET FN2116-S Chr4 34985371 C-T 0 0 Single Base Substitution 0 Homo FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08390 Leucine Rich Repeat family protein, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08400 retrotransposon protein, putative, unclassified, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08410 ELM2 domain containing protein, putative, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08415 expressed protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08430 retrotransposon protein, putative, unclassified, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08440 retrotransposon protein, putative, unclassified, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08450 expressed protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08460 OsFBX115 - F-box domain containing protein, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08470 OsFBX116 - F-box domain containing protein, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08500 conserved hypothetical protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08510 OsFBX117 - F-box domain containing protein, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08520 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08530 retrotransposon protein, putative, unclassified FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08550 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08570 uncharacterized PE-PGRS family protein PE_PGRS20, putative, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08580 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08590 expressed protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08600 ZOS4-05 - C2H2 zinc finger protein, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08610 retrotransposon protein, putative, unclassified, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08620 retrotransposon protein, putative, unclassified FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08630 expressed protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08640 cadmium tolerance factor, putative, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08650 expressed protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08660 expressed protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08670 retrotransposon protein, putative, unclassified, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08680 retrotransposon protein, putative, unclassified, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08690 expressed protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08700 hypothetical protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08720 transposon protein, putative, CACTA, En/Spm sub-class FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08730 hypothetical protein FN2116-S Chr4 4484001 4745000 0 0 Deletion 260999 LOC_Os04g08740 ethylene receptor, putative, expressed FN2116-S Chr4 8100520 G-A 0 0 Single Base Substitution 0 HET FN2116-S Chr5 14407123 G-T 0 0 Single Base Substitution 0 HET FN2116-S Chr5 20610987 A-C 0 0 Single Base Substitution 0 Homo FN2116-S Chr5 21352350 21352354 0 0 Deletion 4 Homo FN2116-S Chr5 22791656 G-A 0 0 Single Base Substitution 0 Homo FN2116-S Chr5 24181664 24181667 0 0 Insertion 3 HET FN2116-S Chr5 7603789 7603791 0 0 Deletion 2 frameshift_variant HET LOC_Os05g13730 retrotransposon protein, putative, unclassified, expressed FN2116-S Chr5 7609443 C-T 0 0 Single Base Substitution 0 HET FN2116-S Chr6 16450784 16450839 0 0 Insertion 55 frameshift_variant HET LOC_Os06g28850 retrotransposon, putative, centromere-specific, expressed FN2116-S Chr6 19961727 19961739 0 0 Deletion 12 HET FN2116-S Chr6 29555843 29555845 0 0 Deletion 2 HET FN2116-S Chr6 9689729 G-A 0 0 Single Base Substitution 0 HET FN2116-S Chr7 11936945 G-A 0 0 Single Base Substitution 0 HET FN2116-S Chr7 14449539 14449542 0 0 Insertion 3 HET FN2116-S Chr7 27828973 G-T 0 0 Single Base Substitution 0 HET FN2116-S Chr7 3841737 T-A 0 0 Single Base Substitution 0 HET FN2116-S Chr7 4995001 5005000 0 0 Deletion 9999 LOC_Os07g09460 expressed protein FN2116-S Chr7 4995001 5005000 0 0 Deletion 9999 LOC_Os07g09470 ATPase, putative, expressed FN2116-S Chr7 4995001 5005000 0 0 Deletion 9999 LOC_Os07g09480 ATPase, putative, expressed FN2116-S Chr8 1065214 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g02570 DUF1517 domain containing protein, putative, expressed FN2116-S Chr8 19543893 C-T 0 0 Single Base Substitution 0 HET FN2116-S Chr8 20889108 21533455 0 0 Inversion 0 FN2116-S Chr8 20889108 21533455 0 0 Inversion 0 LOC_Os08g34310 ZOS8-05 - C2H2 zinc finger protein, expressed FN2116-S Chr8 20889111 21533455 0 0 Inversion 0 FN2116-S Chr8 20889111 21533455 0 0 Inversion 0 LOC_Os08g34310 ZOS8-05 - C2H2 zinc finger protein, expressed FN2116-S Chr8 4898574 T-G 0 0 Single Base Substitution 0 HET FN2116-S Chr8 7315223 Chr6 18384318 0 Translocation 0 LOC_Os06g31630 retrotransposon protein, putative, Ty3-gypsy subclass FN2116-S Chr8 7315223 Chr6 18384318 0 Translocation 0 LOC_Os08g12400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2116-S Chr8 9160818 G-A 0 0 Single Base Substitution 0 HET FN2116-S Chr8 9160835 G-A 0 0 Single Base Substitution 0 HET FN2116-S Chr8 9873997 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g16190 retrotransposon protein, putative, unclassified, expressed FN2116-S Chr9 12273381 12273385 0 0 Deletion 4 Homo FN2116-S Chr9 7777200 C-T 0 0 Single Base Substitution 0 HET