FN2128-S Chr1 1299819 1300083 0 0 Inversion 0 FN2128-S Chr1 17433812 G-T 0 0 Single Base Substitution 0 HET FN2128-S Chr1 2021787 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g04530 expressed protein FN2128-S Chr1 440148 440392 0 0 Inversion 0 LOC_Os01g01830 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed FN2128-S Chr1 6043006 G-A 0 0 Single Base Substitution 0 HET FN2128-S Chr10 10393832 C-T 0 0 Single Base Substitution 0 HET FN2128-S Chr10 13009113 C-A 0 0 Single Base Substitution 0 HET FN2128-S Chr10 22733338 22733343 0 0 Deletion 5 frameshift_variant Homo LOC_Os10g42210 enoyl-CoA-hydratase, putative, expressed FN2128-S Chr10 2951840 G-A 0 0 Single Base Substitution 0 HET FN2128-S Chr10 846232 G-T 0 0 Single Base Substitution 0 HET FN2128-S Chr11 18051951 G-T 0 0 Single Base Substitution 0 HET FN2128-S Chr11 19228368 19228634 0 0 Inversion 0 LOC_Os11g32580 chalcone synthase, putative, expressed FN2128-S Chr11 23748391 23748529 0 0 Inversion 0 LOC_Os11g39830 expressed protein FN2128-S Chr11 26664240 G-A 0 0 Single Base Substitution 0 Homo FN2128-S Chr11 4452873 Chr2 30921386 0 Translocation 0 FN2128-S Chr11 4452873 Chr2 30921386 0 Translocation 0 LOC_Os02g50620 dehydrogenase E1 component domain containing protein, expressed FN2128-S Chr11 4452873 Chr7 29240857 0 Translocation 0 FN2128-S Chr11 7337713 Chr5 14772369 0 Translocation 0 FN2128-S Chr11 7337713 Chr5 14772369 0 Translocation 0 LOC_Os05g25400 RNA binding protein, putative, expressed FN2128-S Chr12 10647413 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g18400 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr12 11023137 G-C 0 0 Single Base Substitution 0 HET FN2128-S Chr12 19746886 A-G 0 0 Single Base Substitution 0 HET FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05050 stem-specific protein TSJT1, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05060 expressed protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05070 expressed protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05080 PMR5, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05090 peptidyl-prolyl isomerase, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05110 pyruvate kinase, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05120 receptor kinase, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05130 expressed protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05144 hypothetical protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05151 hypothetical protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05160 transposon protein, putative, Mutator sub-class, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05170 expressed protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05180 avr9/Cf-9 rapidly elicited protein, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05190 expressed protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05200 DNA binding protein, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05210 expressed protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05220 expressed protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05230 ATP-dependent RNA helicase, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05250 hypothetical protein FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05260 phytosulfokines precursor, putative, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05270 zinc finger, C3HC4 type domain containing protein, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05280 zinc finger, C3HC4 type domain containing protein, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05290 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr12 2206001 2378000 0 0 Deletion 171999 LOC_Os12g05310 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr12 26148524 26148649 0 0 Inversion 0 FN2128-S Chr12 7746361 T-C 0 0 Single Base Substitution 0 HET FN2128-S Chr12 8605361 Chr8 15765065 0 Translocation 0 FN2128-S Chr12 8605361 Chr8 15765065 0 Translocation 0 LOC_Os08g25880 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr12 9041974 G-C 0 0 Single Base Substitution 0 HET FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25140 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25150 expressed protein FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25160 retrotransposon, putative, centromere-specific, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25170 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25190 retrotransposon, putative, centromere-specific, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25200 retrotransposon, putative, centromere-specific, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25210 retrotransposon, putative, centromere-specific, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25220 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25230 expressed protein FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25240 hypothetical protein FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25260 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25270 expressed protein FN2128-S Chr2 14607001 14731000 0 0 Deletion 123999 LOC_Os02g25280 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25400 retrotransposon protein, putative, unclassified FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25410 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25440 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25449 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25460 transposon protein, putative, unclassified FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25470 transposon protein, putative, unclassified, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25480 retrotransposon protein, putative, Ty1-copia subclass FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25490 retrotransposon protein, putative, Ty1-copia subclass FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25500 retrotransposon protein, putative, Ty3-gypsy subclass FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25510 retrotransposon protein, putative, unclassified FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25530 retrotransposon protein, putative, Ty3-gypsy subclass FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25550 transposon protein, putative, CACTA, En/Spm sub-class FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25580 Sec1 family transport protein, putative, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25590 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25600 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25610 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25620 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25624 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25630 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25640 glutelin, putative, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25650 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25670 retrotransposon, putative, centromere-specific, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25680 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25690 hypothetical protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25700 O-acyltransferase, putative, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25710 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25750 retrotransposon protein, putative, unclassified FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25755 expressed protein FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25760 retrotransposon protein, putative, unclassified FN2128-S Chr2 14808001 15097000 0 0 Deletion 288999 LOC_Os02g25770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2128-S Chr2 15148559 15148560 0 0 Deletion 1 HET FN2128-S Chr2 20972819 20972953 0 0 Inversion 0 LOC_Os02g34970 no apical meristem protein, putative, expressed FN2128-S Chr2 22440656 22440658 0 0 Insertion 2 HET FN2128-S Chr2 27490994 27491367 0 0 Inversion 0 LOC_Os02g45250 homeobox and START domains containing protein, putative, expressed FN2128-S Chr2 27736951 27737203 0 0 Inversion 0 LOC_Os02g45590 PPR repeat domain containing protein, putative, expressed FN2128-S Chr2 30594635 30594776 0 0 Inversion 0 LOC_Os02g50100 SET domain-containing protein, putative, expressed FN2128-S Chr2 33485515 A-G 0 0 Single Base Substitution 0 HET FN2128-S Chr2 34760050 34760776 0 0 Inversion 0 FN2128-S Chr2 35735831 35735832 0 0 Insertion 1 frameshift_variant HET LOC_Os02g58430 transposon protein, putative, unclassified, expressed FN2128-S Chr2 4715507 4715813 0 0 Inversion 0 LOC_Os02g09170 sucrose-phosphate synthase, putative, expressed FN2128-S Chr3 19432933 19433296 0 0 Inversion 0 LOC_Os03g34102 retrotransposon, putative, centromere-specific FN2128-S Chr3 21482187 G-A 0 0 Single Base Substitution 0 HET FN2128-S Chr3 21928067 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g39460 retrotransposon, putative, centromere-specific FN2128-S Chr3 21928069 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g39460 retrotransposon, putative, centromere-specific FN2128-S Chr3 27075278 A-C 0 0 Single Base Substitution 0 HET FN2128-S Chr3 29655854 29656299 0 0 Inversion 0 FN2128-S Chr3 31562328 31562329 0 0 Insertion 1 HET FN2128-S Chr3 31869750 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g55990 homeobox domain containing protein, expressed FN2128-S Chr3 6951231 G-T 0 0 Single Base Substitution 0 Homo FN2128-S Chr4 10908930 C-A 0 0 Single Base Substitution 0 Homo FN2128-S Chr4 20209450 20209453 0 0 Deletion 3 HET FN2128-S Chr4 22961260 A-G 0 0 Single Base Substitution 0 HET FN2128-S Chr4 23173430 23173530 0 0 Inversion 0 LOC_Os04g39020 aldehyde dehydrogenase, putative, expressed FN2128-S Chr4 25989381 Chr2 26794085 0 Translocation 0 FN2128-S Chr4 28183337 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g47520 growth regulator related protein, putative, expressed FN2128-S Chr4 30032643 30032825 0 0 Inversion 0 FN2128-S Chr4 5227345 G-C 0 0 Single Base Substitution 0 Homo FN2128-S Chr5 17892135 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g30830 retrotransposon protein, putative, unclassified FN2128-S Chr5 1820140 C-G 0 0 Single Base Substitution 0 Homo FN2128-S Chr5 19648030 T-C 0 0 Single Base Substitution 0 Homo FN2128-S Chr5 23346919 G-T 0 0 Single Base Substitution 0 Homo FN2128-S Chr5 24882075 24882084 0 0 Deletion 9 Homo FN2128-S Chr5 5956570 5956867 0 0 Inversion 0 FN2128-S Chr6 10851188 C-T 0 0 Single Base Substitution 0 HET FN2128-S Chr6 11208180 11208366 0 0 Inversion 0 FN2128-S Chr6 16481475 G-A 0 0 Single Base Substitution 0 HET FN2128-S Chr6 8193641 8193958 0 0 Inversion 0 FN2128-S Chr7 16614601 Chr2 14774815 0 Translocation 0 FN2128-S Chr7 16614601 Chr2 14774815 0 Translocation 0 LOC_Os02g25340 retrotransposon, putative, centromere-specific FN2128-S Chr7 18597593 18597611 0 0 Deletion 18 Homo FN2128-S Chr7 21219720 21219737 0 0 Deletion 17 Homo FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37790 expressed protein FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37800 bromodomain domain containing protein, expressed FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37810 STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37820 expressed protein FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37830 peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37840 lipase, putative, expressed FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37850 expressed protein FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr7 22655001 22716000 0 0 Deletion 60999 LOC_Os07g37870 retrotransposon protein, putative, unclassified, expressed FN2128-S Chr7 23603044 23603320 0 0 Inversion 0 LOC_Os07g39400 polyol transporter 5, putative, expressed FN2128-S Chr7 9309368 9309684 0 0 Inversion 0 FN2128-S Chr8 1437763 1437764 0 0 Deletion 1 HET FN2128-S Chr8 26734110 26734228 0 0 Inversion 0 FN2128-S Chr8 5303829 G-A 0 0 Single Base Substitution 0 HET FN2128-S Chr8 704588 C-A 0 0 Single Base Substitution 0 Homo FN2128-S Chr9 10025081 10025083 0 0 Deletion 2 HET FN2128-S Chr9 10519733 T-A 0 0 Single Base Substitution 0 Homo FN2128-S Chr9 13122373 C-T 0 0 Single Base Substitution 0 Homo FN2128-S Chr9 16546254 16546493 0 0 Inversion 0 LOC_Os09g27210 lecithine cholesterol acyltransferase, putative, expressed FN2128-S Chr9 21350572 T-C 0 0 Single Base Substitution 0 Homo