FN2129-S Chr1 10400354 10400786 0 0 Inversion 0 FN2129-S Chr1 21003504 A-G 0 0 Single Base Substitution 0 Homo FN2129-S Chr1 21127931 21128244 0 0 Inversion 0 LOC_Os01g37770 RWD domain containing protein, expressed FN2129-S Chr1 21300109 A-T 0 0 Single Base Substitution 0 HET FN2129-S Chr1 23047852 23047854 0 0 Insertion 2 HET FN2129-S Chr1 23122096 23122108 0 0 Deletion 12 HET FN2129-S Chr1 25092253 25092533 0 0 Inversion 0 FN2129-S Chr1 27326379 27326568 0 0 Inversion 0 LOC_Os01g47760 OsGrx_I1 - glutaredoxin subgroup III, expressed FN2129-S Chr1 29522811 29523055 0 0 Inversion 0 LOC_Os01g51330 expressed protein FN2129-S Chr1 31479258 31479260 0 0 Insertion 2 HET FN2129-S Chr1 40678122 40678460 0 0 Inversion 0 FN2129-S Chr1 8564741 A-G 0 0 Single Base Substitution 0 HET FN2129-S Chr10 12765858 12765860 0 0 Insertion 2 HET FN2129-S Chr10 19559818 19559994 0 0 Inversion 0 FN2129-S Chr10 21690272 21690718 0 0 Inversion 0 FN2129-S Chr10 21690272 21690718 0 0 Inversion 0 LOC_Os10g40510 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2129-S Chr10 21872168 21872280 0 0 Inversion 0 FN2129-S Chr10 22066081 G-A 0 0 Single Base Substitution 0 HET FN2129-S Chr10 547227 G-A 0 0 Single Base Substitution 0 Homo FN2129-S Chr11 1737721 A-G 0 0 Single Base Substitution 0 HET FN2129-S Chr11 20765444 20765873 0 0 Inversion 0 LOC_Os11g35440 hypothetical protein FN2129-S Chr11 2466816 2467085 0 0 Inversion 0 LOC_Os11g05480 transcription factor, putative, expressed FN2129-S Chr11 26002703 Chr6 9594568 0 Translocation 0 FN2129-S Chr11 26945585 26945889 0 0 Inversion 0 LOC_Os11g44560 protein kinase domain containing protein, expressed FN2129-S Chr11 27141710 27141724 0 0 Deletion 14 HET FN2129-S Chr11 28129772 28130316 0 0 Inversion 0 FN2129-S Chr11 329742 329748 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os11g01570 PMR5, putative, expressed FN2129-S Chr11 4095205 C-T 0 0 Single Base Substitution 0 HET FN2129-S Chr11 5453446 G-A 0 0 Single Base Substitution 0 HET FN2129-S Chr11 5740953 G-A 0 0 Single Base Substitution 0 HET FN2129-S Chr11 7552677 G-T 0 0 Single Base Substitution 0 Homo FN2129-S Chr12 15994306 15994774 0 0 Inversion 0 FN2129-S Chr12 17095009 C-T 0 0 Single Base Substitution 0 HET FN2129-S Chr12 17458537 17458540 0 0 Deletion 3 HET FN2129-S Chr12 20982105 C-T 0 0 Single Base Substitution 0 Homo FN2129-S Chr12 25191985 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g40690 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr12 25191986 C-T 0 0 Single Base Substitution 0 Homo FN2129-S Chr12 27377051 27377189 0 0 Inversion 0 LOC_Os12g44130 expressed protein FN2129-S Chr12 6728569 C-T 0 0 Single Base Substitution 0 HET FN2129-S Chr2 10756220 10756221 0 0 Deletion 1 HET FN2129-S Chr2 118722 T-C 0 0 Single Base Substitution 0 HET FN2129-S Chr2 15335012 G-A 0 0 Single Base Substitution 0 HET FN2129-S Chr2 20530011 20530130 0 0 Inversion 0 LOC_Os02g34310 expressed protein FN2129-S Chr2 29606242 29606645 0 0 Inversion 0 LOC_Os02g48360 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed FN2129-S Chr2 31101301 G-A 0 0 Single Base Substitution 0 HET FN2129-S Chr2 31101302 T-G 0 0 Single Base Substitution 0 HET FN2129-S Chr2 34346430 34346714 0 0 Inversion 0 FN2129-S Chr2 5412191 5412325 0 0 Inversion 0 LOC_Os02g10300 polygalacturonase, putative, expressed FN2129-S Chr2 5830449 T-C 0 0 Single Base Substitution 0 HET FN2129-S Chr2 5894166 5894498 0 0 Inversion 0 FN2129-S Chr3 13467920 13467921 0 0 Deletion 1 HET FN2129-S Chr3 15436025 15436240 0 0 Inversion 0 FN2129-S Chr3 15647690 15647848 0 0 Inversion 0 LOC_Os03g27310 histone H3, putative, expressed FN2129-S Chr3 17500003 17500004 0 0 Deletion 1 frameshift_variant HET LOC_Os03g30710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2129-S Chr3 22841859 22841867 0 0 Deletion 8 HET FN2129-S Chr3 30050008 30050244 0 0 Inversion 0 FN2129-S Chr3 3026746 3027095 0 0 Inversion 0 LOC_Os03g06050 expansin precursor, putative, expressed FN2129-S Chr3 34183301 34183709 0 0 Inversion 0 FN2129-S Chr3 35786861 35787219 0 0 Inversion 0 FN2129-S Chr4 10840220 T-C 0 0 Single Base Substitution 0 HET FN2129-S Chr4 1274218 1274221 0 0 Insertion 3 HET FN2129-S Chr4 12986778 12986781 0 0 Deletion 3 HET FN2129-S Chr4 13243008 13243198 0 0 Inversion 0 FN2129-S Chr4 14069658 14069779 0 0 Inversion 0 FN2129-S Chr4 16341999 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g27650 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr4 17450648 17450649 0 0 Deletion 1 HET FN2129-S Chr4 19149670 C-T 0 0 Single Base Substitution 0 HET FN2129-S Chr4 22910244 22910411 0 0 Inversion 0 FN2129-S Chr4 22910244 22910411 0 0 Inversion 0 LOC_Os04g38560 pectinesterase, putative, expressed FN2129-S Chr4 24472422 24472522 0 0 Inversion 0 LOC_Os04g41250 armadillo/beta-catenin repeat family protein, putative, expressed FN2129-S Chr4 24947576 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g42140 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed FN2129-S Chr4 25290349 C-T 0 0 Single Base Substitution 0 HET FN2129-S Chr4 26667804 26667996 0 0 Inversion 0 LOC_Os04g45070 remorin, putative, expressed FN2129-S Chr4 2766327 2766329 0 0 Deletion 2 HET FN2129-S Chr4 28412089 28412091 0 0 Deletion 2 HET FN2129-S Chr4 28816553 28816940 0 0 Inversion 0 FN2129-S Chr4 28940446 28940605 0 0 Inversion 0 LOC_Os04g48550 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr4 28979057 28979199 0 0 Inversion 0 FN2129-S Chr4 31410507 31410899 0 0 Inversion 0 LOC_Os04g52750 expressed protein FN2129-S Chr4 33812130 33812131 0 0 Deletion 1 frameshift_variant Homo LOC_Os04g56700 naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed FN2129-S Chr4 4353175 4353500 0 0 Inversion 0 LOC_Os04g08190 expressed protein FN2129-S Chr5 19171982 19172114 0 0 Inversion 0 FN2129-S Chr5 21755976 21755978 0 0 Deletion 2 HET FN2129-S Chr5 23461523 23461797 0 0 Inversion 0 FN2129-S Chr5 24028787 24029014 0 0 Inversion 0 LOC_Os05g40990 NADH-cytochrome b5 reductase, putative, expressed FN2129-S Chr5 249197 249460 0 0 Inversion 0 LOC_Os05g01430 polygalacturonase inhibitor 2 precursor, putative, expressed FN2129-S Chr5 25915536 25915987 0 0 Inversion 0 LOC_Os05g44550 zinc finger family protein, putative, expressed FN2129-S Chr5 26384546 26384816 0 0 Inversion 0 FN2129-S Chr5 26384546 26384816 0 0 Inversion 0 LOC_Os05g45500 expressed protein FN2129-S Chr5 28253745 28254166 0 0 Inversion 0 LOC_Os05g49250 hhH-GPD superfamily base excision DNA repair protein, putative, expressed FN2129-S Chr5 8551261 8551364 0 0 Inversion 0 FN2129-S Chr5 8551261 8551364 0 0 Inversion 0 LOC_Os05g15060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2129-S Chr5 8654875 C-T 0 0 Single Base Substitution 0 Homo FN2129-S Chr6 22124585 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_ACCEPTOR Homo LOC_Os06g37420 histone deacetylase, putative, expressed FN2129-S Chr6 23022546 T-A 0 0 Single Base Substitution 0 Homo FN2129-S Chr6 23292428 A-G 0 0 Single Base Substitution 0 Homo FN2129-S Chr6 26581751 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g44070 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr6 28951040 28951481 0 0 Inversion 0 LOC_Os06g47834 expressed protein FN2129-S Chr6 3766375 3766624 0 0 Inversion 0 LOC_Os06g07770 expressed protein FN2129-S Chr6 8763018 C-A 0 0 Single Base Substitution 0 HET FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16919 expressed protein FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16930 retrotransposon protein, putative, Ty3-gypsy subclass FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16940 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16950 expressed protein FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16960 O-methyltransferase, putative, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16970 hypothetical protein FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16980 DNA topoisomerase I family protein, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g16990 expressed protein FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17000 BURP domain containing protein, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17020 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17030 transposon protein, putative, unclassified, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17040 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17050 expressed protein FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17060 retrotransposon protein, putative, Ty1-copia subclass FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17070 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17080 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17090 UDP-glycosyltransferase, putative, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17100 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17110 glycosyltransferase, putative, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17120 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17130 expressed protein FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17140 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17150 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17160 transposon protein, putative, unclassified, expressed FN2129-S Chr6 9795001 9956000 0 0 Deletion 160999 LOC_Os06g17170 retrotransposon protein, putative, unclassified FN2129-S Chr7 11547762 11548022 0 0 Inversion 0 FN2129-S Chr7 15406419 15406583 0 0 Inversion 0 FN2129-S Chr7 15406419 15406583 0 0 Inversion 0 LOC_Os07g26690 aquaporin protein, putative, expressed FN2129-S Chr7 23612713 23612924 0 0 Inversion 0 FN2129-S Chr7 23612713 23612924 0 0 Inversion 0 LOC_Os07g39420 retrotransposon protein, putative, unclassified, expressed FN2129-S Chr7 6083727 6084089 0 0 Inversion 0 FN2129-S Chr7 925081 T-C 0 0 Single Base Substitution 0 Homo FN2129-S Chr7 9443682 9443683 0 0 Deletion 1 Homo FN2129-S Chr8 12282589 T-C 0 0 Single Base Substitution 0 HET FN2129-S Chr8 13642396 13642397 0 0 Insertion 1 frameshift_variant HET LOC_Os08g22680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2129-S Chr8 17259784 A-T 0 0 Single Base Substitution 0 HET FN2129-S Chr8 18480091 18480303 0 0 Inversion 0 LOC_Os08g30060 proton pump interactor, putative, expressed FN2129-S Chr8 21832090 21832245 0 0 Inversion 0 FN2129-S Chr8 23789810 23789827 0 0 Deletion 17 Homo FN2129-S Chr8 2466567 C-G 0 0 Single Base Substitution 0 HET FN2129-S Chr8 2543550 2543718 0 0 Inversion 0 FN2129-S Chr8 26717558 26717559 0 0 Deletion 1 HET FN2129-S Chr8 26954977 G-A 0 0 Single Base Substitution 0 HET FN2129-S Chr8 3604014 T-C 0 0 Single Base Substitution 0 HET FN2129-S Chr8 4727063 4727064 0 0 Deletion 1 Homo FN2129-S Chr8 8049933 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g13540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2129-S Chr8 8733971 8733972 0 0 Insertion 1 HET FN2129-S Chr9 11041907 G-T 0 0 Single Base Substitution 0 HET FN2129-S Chr9 14356202 A-G 0 0 Single Base Substitution 0 HET FN2129-S Chr9 17704917 17705144 0 0 Inversion 0 LOC_Os09g29130 ZF-HD protein dimerisation region containing protein, expressed FN2129-S Chr9 20236561 20236663 0 0 Inversion 0 LOC_Os09g34280 ankyrin repeat-containing protein, putative, expressed FN2129-S Chr9 2096813 2097180 0 0 Inversion 0 FN2129-S Chr9 4177046 4177291 0 0 Inversion 0 FN2129-S Chr9 8099038 C-A 0 0 Single Base Substitution 0 HET