FN2160-S Chr1 12752121 12752417 0 0 Inversion 0 LOC_Os01g22680 fruit bromelain precursor, putative, expressed FN2160-S Chr1 15881505 15881506 0 0 Insertion 1 frameshift_variant&stop_lost&splice_region_variant HET LOC_Os01g28350 hypothetical protein FN2160-S Chr1 17983240 17983470 0 0 Inversion 0 FN2160-S Chr1 20990386 20990605 0 0 Inversion 0 LOC_Os01g37560 chaperone protein dnaJ 49, putative, expressed FN2160-S Chr1 22262943 G-A 0 0 Single Base Substitution 0 Homo FN2160-S Chr1 22306112 C-T 0 0 Single Base Substitution 0 HET FN2160-S Chr1 22509968 22509970 0 0 Insertion 2 HET FN2160-S Chr1 23371690 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr1 24036545 C-A 0 0 Single Base Substitution 0 HET FN2160-S Chr1 24841574 24841754 0 0 Inversion 0 LOC_Os01g43410 CAMK_CAMK_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2160-S Chr1 29749727 C-G 0 0 Single Base Substitution 0 HET FN2160-S Chr1 38494259 38494582 0 0 Inversion 0 FN2160-S Chr1 541300 541498 0 0 Inversion 0 LOC_Os01g02000 phosphate transporter 1, putative, expressed FN2160-S Chr1 9207966 9208182 0 0 Inversion 0 LOC_Os01g16260 major facilitator superfamily antiporter, putative, expressed FN2160-S Chr10 13064938 C-T 0 0 Single Base Substitution 0 HET FN2160-S Chr10 14749988 14749989 0 0 Deletion 1 HET FN2160-S Chr10 16029807 C-A 0 0 Single Base Substitution 0 Homo FN2160-S Chr10 18374404 18374413 0 0 Deletion 9 Homo FN2160-S Chr10 3211207 3211208 0 0 Insertion 1 HET FN2160-S Chr10 3801454 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g07229 dehydrogenase, putative, expressed FN2160-S Chr11 14800035 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr11 17619319 17619852 0 0 Inversion 0 FN2160-S Chr11 17957926 C-A 0 0 Single Base Substitution 0 HET FN2160-S Chr11 18850397 G-A 0 0 Single Base Substitution 0 Homo FN2160-S Chr11 21082693 21083093 0 0 Inversion 0 FN2160-S Chr11 2402770 2402951 0 0 Inversion 0 FN2160-S Chr11 26940884 26941044 0 0 Inversion 0 LOC_Os11g44560 protein kinase domain containing protein, expressed FN2160-S Chr11 27366401 27366610 0 0 Inversion 0 FN2160-S Chr12 13719982 13719983 0 0 Insertion 1 HET FN2160-S Chr12 19759660 19816054 0 0 Inversion 0 FN2160-S Chr12 19759660 19816054 0 0 Inversion 0 LOC_Os12g32800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2160-S Chr12 19759669 19816063 0 0 Inversion 0 FN2160-S Chr12 19759669 19816063 0 0 Inversion 0 LOC_Os12g32800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2160-S Chr12 22432770 A-T 0 0 Single Base Substitution 0 Homo FN2160-S Chr12 26995546 Chr2 10940032 0 Translocation 0 FN2160-S Chr12 26995546 Chr2 10940032 0 Translocation 0 LOC_Os02g18770 expressed protein FN2160-S Chr12 610558 Chr2 23232074 0 Translocation 0 LOC_Os12g02050 expressed protein FN2160-S Chr2 11290643 C-G 0 0 Single Base Substitution 0 Homo FN2160-S Chr2 13222730 13222733 0 0 Deletion 3 HET FN2160-S Chr2 16338960 16339119 0 0 Inversion 0 LOC_Os02g27590 hypothetical protein FN2160-S Chr2 18355254 C-T 0 0 Single Base Substitution 0 Homo FN2160-S Chr2 18355255 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g30800 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed FN2160-S Chr2 21980392 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr2 23352921 23352922 0 0 Insertion 1 HET FN2160-S Chr2 23454751 A-T 0 0 Single Base Substitution 0 HET FN2160-S Chr2 25019000 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr2 25044510 25044667 0 0 Inversion 0 FN2160-S Chr2 31104365 31104489 0 0 Inversion 0 FN2160-S Chr2 6940877 C-T 0 0 Single Base Substitution 0 Homo FN2160-S Chr2 9710399 9711036 0 0 Inversion 0 FN2160-S Chr3 12582981 12583107 0 0 Inversion 0 FN2160-S Chr3 14190196 14190484 0 0 Inversion 0 LOC_Os03g24910 nodulation protein-related, putative, expressed FN2160-S Chr3 14652616 C-T 0 0 Single Base Substitution 0 HET FN2160-S Chr3 15780243 15780245 0 0 Insertion 2 HET FN2160-S Chr3 19728688 19728691 0 0 Deletion 3 Homo FN2160-S Chr3 2018142 2018145 0 0 Deletion 3 disruptive_inframe_deletion Homo LOC_Os03g04390 pentatricopeptide, putative, expressed FN2160-S Chr3 24621669 24622159 0 0 Inversion 0 LOC_Os03g43890 WD domain, G-beta repeat domain containing protein, expressed FN2160-S Chr3 29546045 T-C 0 0 Single Base Substitution 0 HET FN2160-S Chr3 32935958 A-T 0 0 Single Base Substitution 0 HET FN2160-S Chr3 6781707 A-G 0 0 Single Base Substitution 0 HET FN2160-S Chr3 7281128 Chr1 13356190 0 Translocation 0 LOC_Os01g23740 OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed FN2160-S Chr3 7281128 Chr1 13356190 0 Translocation 0 LOC_Os03g13460 microtubule associated protein, putative, expressed FN2160-S Chr3 8436641 8437126 0 0 Inversion 0 LOC_Os03g15420 dynamin family protein, putative, expressed FN2160-S Chr3 923725 924032 0 0 Inversion 0 LOC_Os03g02514 hydrolase, alpha/beta fold family protein, putative, expressed FN2160-S Chr4 13065631 C-T 0 0 Single Base Substitution 0 HET FN2160-S Chr4 1398712 G-T 0 0 Single Base Substitution 0 HET FN2160-S Chr4 20999051 C-T 0 0 Single Base Substitution 0 HET FN2160-S Chr4 22285589 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr4 23000485 23000706 0 0 Inversion 0 FN2160-S Chr4 24578262 24578551 0 0 Inversion 0 FN2160-S Chr4 26039022 26039400 0 0 Inversion 0 LOC_Os04g43922 exosome complex exonuclease rrp4, putative, expressed FN2160-S Chr4 29535328 29535894 0 0 Inversion 0 LOC_Os04g49510 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2160-S Chr4 31253712 31254024 0 0 Inversion 0 LOC_Os04g52560 transposon protein, putative, unclassified, expressed FN2160-S Chr4 34659152 34659382 0 0 Inversion 0 FN2160-S Chr4 6290899 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr4 9434623 G-T 0 0 Single Base Substitution 0 HET FN2160-S Chr5 1536064 1536376 0 0 Inversion 0 LOC_Os05g03610 phospholipase C, putative, expressed FN2160-S Chr5 17103577 C-T 0 0 Single Base Substitution 0 Homo FN2160-S Chr5 18042391 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr5 22848184 C-T 0 0 Single Base Substitution 0 Homo FN2160-S Chr5 25882940 25882942 0 0 Deletion 2 HET FN2160-S Chr5 2762250 2762416 0 0 Deletion 166 HET FN2160-S Chr5 4037405 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g07540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2160-S Chr6 12994253 C-T 0 0 Single Base Substitution 0 Homo FN2160-S Chr6 17335323 C-T 0 0 Single Base Substitution 0 Homo FN2160-S Chr6 19422737 Chr1 25610077 0 Translocation 0 FN2160-S Chr6 19426526 Chr1 25612151 0 Translocation 0 FN2160-S Chr6 2147047 T-A 0 0 Single Base Substitution 0 HET FN2160-S Chr6 22289129 G-A 0 0 Single Base Substitution 0 Homo FN2160-S Chr6 23775959 23776262 0 0 Inversion 0 LOC_Os06g39960 bZIP transcription factor domain containing protein, expressed FN2160-S Chr6 24235892 T-A 0 0 Single Base Substitution 0 Homo FN2160-S Chr6 24414618 24414620 0 0 Insertion 2 HET FN2160-S Chr6 24747880 C-A 0 0 Single Base Substitution 0 Homo FN2160-S Chr6 3140732 3141066 0 0 Inversion 0 FN2160-S Chr6 9380536 9380731 0 0 Inversion 0 FN2160-S Chr7 17073331 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr7 24632813 T-C 0 0 Single Base Substitution 0 HET FN2160-S Chr7 25931643 25931645 0 0 Insertion 2 HET FN2160-S Chr7 27237210 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr7 28020146 G-A 0 0 Single Base Substitution 0 HET FN2160-S Chr7 29132076 29132225 0 0 Inversion 0 LOC_Os07g48650 OsSub54 - Putative Subtilisin homologue, expressed FN2160-S Chr7 5150057 5150279 0 0 Inversion 0 FN2160-S Chr7 6650591 6650592 0 0 Deletion 1 HET FN2160-S Chr7 9960695 9960696 0 0 Deletion 1 Homo FN2160-S Chr8 10857834 10858060 0 0 Inversion 0 FN2160-S Chr8 11423935 C-T 0 0 Single Base Substitution 0 HET FN2160-S Chr8 12394830 12395178 0 0 Inversion 0 FN2160-S Chr8 12394830 12395178 0 0 Inversion 0 LOC_Os08g20636 expressed protein FN2160-S Chr8 14215646 G-A 0 0 Single Base Substitution 0 Homo FN2160-S Chr8 20919948 Chr3 7281126 0 Translocation 0 FN2160-S Chr8 20919948 Chr3 7281126 0 Translocation 0 LOC_Os03g13460 microtubule associated protein, putative, expressed FN2160-S Chr8 20922638 Chr3 7281125 0 Translocation 0 FN2160-S Chr8 20922638 Chr3 7281125 0 Translocation 0 LOC_Os03g13460 microtubule associated protein, putative, expressed FN2160-S Chr8 4144676 4144791 0 0 Inversion 0 FN2160-S Chr8 8255137 8255340 0 0 Inversion 0 FN2160-S Chr8 856576 Chr5 20470806 0 Translocation 0 LOC_Os08g02300 no apical meristem protein, putative, expressed FN2160-S Chr8 856578 Chr5 20470805 0 Translocation 0 LOC_Os08g02300 no apical meristem protein, putative, expressed FN2160-S Chr8 8901349 8901351 0 0 Insertion 2 HET FN2160-S Chr9 11965162 11965539 0 0 Inversion 0 FN2160-S Chr9 12491911 G-C 0 0 Single Base Substitution 0 Homo FN2160-S Chr9 13556519 13556800 0 0 Inversion 0 LOC_Os09g22440 expressed protein FN2160-S Chr9 18549694 18550055 0 0 Inversion 0 FN2160-S Chr9 1897596 1897843 0 0 Inversion 0 LOC_Os09g03750 ankyrin, putative, expressed FN2160-S Chr9 20294565 Chr4 10955034 0 Translocation 0 FN2160-S Chr9 4139258 T-C 0 0 Single Base Substitution 0 HET FN2160-S Chr9 906380 Chr2 18422078 0 Translocation 0