FN2166-S Chr1 11278945 11279147 0 0 Inversion 0 FN2166-S Chr1 14946944 14946947 0 0 Insertion 3 HET FN2166-S Chr1 17165437 17165449 0 0 Deletion 12 HET FN2166-S Chr1 18299015 18299201 0 0 Inversion 0 LOC_Os01g33230 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed FN2166-S Chr1 21352667 21352796 0 0 Inversion 0 FN2166-S Chr1 23038029 A-T 0 0 Single Base Substitution 0 Homo FN2166-S Chr1 23973902 23973903 0 0 Deletion 1 HET FN2166-S Chr1 24637362 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr1 25405860 25406018 0 0 Inversion 0 FN2166-S Chr1 26224609 A-G 0 0 Single Base Substitution 0 HET FN2166-S Chr1 30298239 T-C 0 0 Single Base Substitution 0 Homo FN2166-S Chr1 34941276 35366085 0 0 Inversion 0 LOC_Os01g60410 ubiquitin-conjugating enzyme, putative, expressed FN2166-S Chr1 34941276 35366085 0 0 Inversion 0 LOC_Os01g61100 transposon protein, putative, unclassified, expressed FN2166-S Chr1 35366097 35721717 0 0 Inversion 0 LOC_Os01g61100 transposon protein, putative, unclassified, expressed FN2166-S Chr1 35366097 35721717 0 0 Inversion 0 LOC_Os01g61760 myosin heavy chain-related, putative, expressed FN2166-S Chr1 38092381 T-C 0 0 Single Base Substitution 0 HET FN2166-S Chr1 41937742 T-C 0 0 Single Base Substitution 0 HET FN2166-S Chr1 7019838 T-A 0 0 Single Base Substitution 0 HET FN2166-S Chr1 9005130 9005303 0 0 Inversion 0 LOC_Os01g16000 CRAL/TRIO domain containing protein, expressed FN2166-S Chr10 14929288 14929440 0 0 Inversion 0 LOC_Os10g28640 RIO1 family protein, expressed FN2166-S Chr10 18851560 Chr4 34078966 0 Translocation 0 FN2166-S Chr10 18851568 Chr4 34071875 0 Translocation 0 FN2166-S Chr10 20792513 20792750 0 0 Inversion 0 LOC_Os10g39010 TKL_IRAK_CrRLK1L-1.16 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN2166-S Chr10 22435425 22435531 0 0 Inversion 0 LOC_Os10g41660 zinc finger, C3HC4 type domain containing protein, expressed FN2166-S Chr10 8944938 T-C 0 0 Single Base Substitution 0 HET FN2166-S Chr10 9076083 Chr4 2768659 0 Translocation 0 FN2166-S Chr11 19305168 A-T 0 0 Single Base Substitution 0 Homo FN2166-S Chr11 2087410 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g04894 expressed protein FN2166-S Chr11 2087414 G-C 0 0 Single Base Substitution 0 HET FN2166-S Chr11 25507958 C-T 0 0 Single Base Substitution 0 HET FN2166-S Chr11 2785663 Chr8 4650014 0 Translocation 0 FN2166-S Chr11 2785663 Chr8 4650014 0 Translocation 0 LOC_Os08g08170 transposon protein, putative, CACTA, En/Spm sub-class FN2166-S Chr11 6469086 T-A 0 0 Single Base Substitution 0 Homo FN2166-S Chr11 8192984 Chr4 13912171 0 Translocation 0 FN2166-S Chr12 14452973 14453285 0 0 Inversion 0 FN2166-S Chr12 14452973 14453285 0 0 Inversion 0 LOC_Os12g25180 expressed protein FN2166-S Chr12 22174310 22174487 0 0 Inversion 0 LOC_Os12g36180 auxilin, putative, expressed FN2166-S Chr12 23335812 C-T 0 0 Single Base Substitution 0 HET FN2166-S Chr12 6545635 T-C 0 0 Single Base Substitution 0 HET FN2166-S Chr12 7640010 7640219 0 0 Inversion 0 LOC_Os12g13590 exocyst complex component 5, putative, expressed FN2166-S Chr2 12531434 12531441 0 0 Deletion 7 Homo FN2166-S Chr2 12537487 C-T 0 0 Single Base Substitution 0 Homo FN2166-S Chr2 19183034 Chr1 37115681 0 Translocation 0 FN2166-S Chr2 21353744 21353745 0 0 Deletion 1 HET FN2166-S Chr2 2175584 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr2 22533845 22534081 0 0 Inversion 0 FN2166-S Chr2 25847793 25847795 0 0 Insertion 2 HET FN2166-S Chr2 29204935 29205217 0 0 Inversion 0 FN2166-S Chr2 29611853 29612199 0 0 Inversion 0 LOC_Os02g48370 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed FN2166-S Chr2 33299792 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g54300 expressed protein FN2166-S Chr2 414216 G-T 0 0 Single Base Substitution 0 HET FN2166-S Chr2 414217 A-T 0 0 Single Base Substitution 0 HET FN2166-S Chr3 10656802 10656935 0 0 Inversion 0 FN2166-S Chr3 11854228 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr3 1556797 A-T 0 0 Single Base Substitution 0 HET FN2166-S Chr3 21370545 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr3 24242482 C-T 0 0 Single Base Substitution 0 HET FN2166-S Chr3 28791267 28791681 0 0 Inversion 0 FN2166-S Chr3 28816969 T-C 0 0 Single Base Substitution 0 HET FN2166-S Chr3 29051881 G-C 0 0 Single Base Substitution 0 HET FN2166-S Chr3 31165513 T-A 0 0 Single Base Substitution 0 HET FN2166-S Chr3 8112683 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr4 1277505 T-C 0 0 Single Base Substitution 0 HET FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03390 expressed protein FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03410 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03420 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03430 retrotransposon, putative, centromere-specific FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03440 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03450 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03460 retrotransposon protein, putative, unclassified FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03470 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03480 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1454001 1510000 0 0 Deletion 55999 LOC_Os04g03490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2166-S Chr4 14586968 T-C 0 0 Single Base Substitution 0 Homo FN2166-S Chr4 1514001 1577000 0 0 Deletion 62999 LOC_Os04g03510 expressed protein FN2166-S Chr4 1514001 1577000 0 0 Deletion 62999 LOC_Os04g03520 expressed protein FN2166-S Chr4 1514001 1577000 0 0 Deletion 62999 LOC_Os04g03530 cysteine-rich receptor-like protein kinase 37 precursor, putative, expressed FN2166-S Chr4 1514001 1577000 0 0 Deletion 62999 LOC_Os04g03550 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1514001 1577000 0 0 Deletion 62999 LOC_Os04g03560 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1514001 1577000 0 0 Deletion 62999 LOC_Os04g03579 protein kinase, putative, expressed FN2166-S Chr4 1514001 1577000 0 0 Deletion 62999 LOC_Os04g03600 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03640 retrotransposon protein, putative, Ty1-copia subclass FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03660 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03680 transposon protein, putative, CACTA, En/Spm sub-class FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03710 OsSub36 - Putative Subtilisin homologue, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03720 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03730 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03740 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03760 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03780 retrotransposon protein, putative, unclassified FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03790 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03796 OsSub37 - Putative Subtilisin homologue, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03810 OsSub38 - Putative Subtilisin homologue, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03820 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03830 OsWAK29 - OsWAK receptor-like protein kinase, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03840 retrotransposon protein, putative, unclassified FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03850 OsSub39 - Putative Subtilisin homologue, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03860 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03870 cytochrome P450, putative, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03880 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03884 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03890 cytochrome P450, putative, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03910 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03920 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03930 expressed protein FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03950 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 1590001 1807000 0 0 Deletion 216999 LOC_Os04g03960 hypothetical protein FN2166-S Chr4 1604550 1604840 0 0 Inversion 0 FN2166-S Chr4 19724764 19724765 0 0 Deletion 1 frameshift_variant HET LOC_Os04g32720 retrotransposon protein, putative, unclassified, expressed FN2166-S Chr4 22279901 22280086 0 0 Inversion 0 FN2166-S Chr4 25108756 C-T 0 0 Single Base Substitution 0 HET FN2166-S Chr4 3211404 3211680 0 0 Inversion 0 FN2166-S Chr4 34248074 C-T 0 0 Single Base Substitution 0 HET FN2166-S Chr4 35264914 C-T 0 0 Single Base Substitution 0 HET FN2166-S Chr4 4649084 A-T 0 0 Single Base Substitution 0 HET FN2166-S Chr5 11812573 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g20180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2166-S Chr5 12288221 12288556 0 0 Inversion 0 FN2166-S Chr5 14194641 C-A 0 0 Single Base Substitution 0 HET FN2166-S Chr5 15271549 T-A 0 0 Single Base Substitution 0 HET FN2166-S Chr5 17731024 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr5 21520933 T-C 0 0 Single Base Substitution 0 HET FN2166-S Chr5 22236578 22236704 0 0 Inversion 0 FN2166-S Chr5 2350173 2350507 0 0 Inversion 0 FN2166-S Chr5 24155553 24155893 0 0 Inversion 0 LOC_Os05g41240 Myb-like DNA-binding domain containing protein, putative, expressed FN2166-S Chr5 5266970 5266972 0 0 Insertion 2 HET FN2166-S Chr5 62940 63208 0 0 Inversion 0 LOC_Os05g01030 phospholipid-transporting ATPase, putative, expressed FN2166-S Chr5 9836368 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr6 1146163 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g03110 expressed protein FN2166-S Chr6 1146164 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g03110 expressed protein FN2166-S Chr6 12434849 12434853 0 0 Deletion 4 frameshift_variant Homo LOC_Os06g21560 CDK5RAP3, putative, expressed FN2166-S Chr6 22495131 22495150 0 0 Insertion 19 HET FN2166-S Chr6 23334923 23335081 0 0 Inversion 0 LOC_Os06g39330 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN2166-S Chr6 23462865 Chr3 32007061 0 Translocation 0 LOC_Os06g39515 expressed protein FN2166-S Chr6 24517360 24517362 0 0 Deletion 2 frameshift_variant HET LOC_Os06g41050 expressed protein FN2166-S Chr6 2555191 2555330 0 0 Inversion 0 FN2166-S Chr6 26499155 26566948 0 0 Inversion 0 FN2166-S Chr6 26499165 26566952 0 0 Inversion 0 FN2166-S Chr6 26569036 A-G 0 0 Single Base Substitution 0 Homo FN2166-S Chr6 2866718 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g06190 uncharacterized protein ycf45, putative, expressed FN2166-S Chr7 12960621 C-A 0 0 Single Base Substitution 0 HET FN2166-S Chr7 17108965 17109080 0 0 Deletion 115 HET FN2166-S Chr7 19004562 19004563 0 0 Deletion 1 HET FN2166-S Chr7 26024302 26024303 0 0 Deletion 1 HET FN2166-S Chr7 3753480 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr8 12652116 Chr4 4434857 0 Translocation 0 FN2166-S Chr8 12662666 Chr4 4434843 0 Translocation 0 LOC_Os08g21210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2166-S Chr8 15462744 15596597 0 0 Inversion 0 FN2166-S Chr8 15462744 15596597 0 0 Inversion 0 LOC_Os08g25624 phosphate/phosphate translocator, putative, expressed FN2166-S Chr8 15462759 15596597 0 0 Inversion 0 FN2166-S Chr8 15462759 15596597 0 0 Inversion 0 LOC_Os08g25624 phosphate/phosphate translocator, putative, expressed FN2166-S Chr8 16045578 C-A 0 0 Single Base Substitution 0 HET FN2166-S Chr8 18839687 G-A 0 0 Single Base Substitution 0 HET FN2166-S Chr8 19686890 Chr6 13719896 0 Translocation 0 FN2166-S Chr8 19686890 Chr6 13719896 0 Translocation 0 LOC_Os06g23504 DTW domain containing protein, putative, expressed FN2166-S Chr8 21995868 T-A 0 0 Single Base Substitution 0 HET FN2166-S Chr8 22247717 A-T 0 0 Single Base Substitution 0 HET FN2166-S Chr8 22247719 G-T 0 0 Single Base Substitution 0 HET FN2166-S Chr8 22369139 22369317 0 0 Inversion 0 FN2166-S Chr8 22816298 22816631 0 0 Inversion 0 FN2166-S Chr8 25614818 25615124 0 0 Inversion 0 LOC_Os08g40490 BTB/POZ domain containing protein, expressed FN2166-S Chr8 4650007 Chr2 21197285 0 Translocation 0 LOC_Os08g08170 transposon protein, putative, CACTA, En/Spm sub-class FN2166-S Chr8 5506033 C-G 0 0 Single Base Substitution 0 HET FN2166-S Chr8 6536435 6536561 0 0 Inversion 0 LOC_Os08g11110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2166-S Chr9 11243501 11243502 0 0 Deletion 1 Homo FN2166-S Chr9 11332386 11332388 0 0 Deletion 2 HET FN2166-S Chr9 457233 457412 0 0 Inversion 0 LOC_Os09g01640 CAX-interacting protein 4, putative, expressed FN2166-S Chr9 5070002 5070148 0 0 Inversion 0