FN2172-S Chr1 15139921 T-C 0 0 Single Base Substitution 0 HET FN2172-S Chr1 16156299 A-G 0 0 Single Base Substitution 0 HET FN2172-S Chr1 17722031 17722032 0 0 Insertion 1 HET FN2172-S Chr1 28575831 T-C 0 0 Single Base Substitution 0 Homo FN2172-S Chr1 41009999 41010548 0 0 Inversion 0 FN2172-S Chr10 15755487 15755494 0 0 Deletion 7 frameshift_variant HET LOC_Os10g30340 expansin precursor, putative, expressed FN2172-S Chr10 19772998 19773369 0 0 Inversion 0 FN2172-S Chr10 20921731 T-A 0 0 Single Base Substitution 0 Homo FN2172-S Chr10 3441399 G-A 0 0 Single Base Substitution 0 HET FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27795 expressed protein FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27799 expressed protein FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27810 retrotransposon protein, putative, unclassified, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27840 retrotransposon protein, putative, Ty3-gypsy subclass FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27860 retrotransposon protein, putative, Ty3-gypsy subclass FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27880 retrotransposon protein, putative, unclassified, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27890 retrotransposon protein, putative, Ty3-gypsy subclass FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27900 retrotransposon protein, putative, unclassified FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27930 hypothetical protein FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27940 expressed protein FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27970 glycine-rich cell wall structural protein 1 precursor, putative, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27980 lipase class 3 family protein, putative, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g27990 hypothetical protein FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28000 expressed protein FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28010 hypothetical protein FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28030 transposon protein, putative, CACTA, En/Spm sub-class FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28040 transposon protein, putative, CACTA, En/Spm sub-class FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28060 cytochrome P450, putative, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28065 cytochrome P450 71C1, putative, expressed FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28070 retrotransposon protein, putative, unclassified FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28080 expressed protein FN2172-S Chr11 16000001 16148000 0 0 Deletion 147999 LOC_Os11g28104 TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2172-S Chr11 16476001 16487000 0 0 Deletion 10999 LOC_Os11g28570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2172-S Chr11 16476001 16487000 0 0 Deletion 10999 LOC_Os11g28580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2172-S Chr11 16476001 16487000 0 0 Deletion 10999 LOC_Os11g28590 retrotransposon protein, putative, Ty1-copia subclass FN2172-S Chr11 16476317 16496827 0 0 Inversion 0 LOC_Os11g28570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2172-S Chr11 16493001 16534000 0 0 Deletion 40999 LOC_Os11g28600 expressed protein FN2172-S Chr11 16493001 16534000 0 0 Deletion 40999 LOC_Os11g28610 transporter family protein, putative, expressed FN2172-S Chr11 2474541 Chr6 24981541 0 Translocation 0 FN2172-S Chr11 3494314 G-C 0 0 Single Base Substitution 0 HET FN2172-S Chr11 7243844 7243845 0 0 Deletion 1 HET FN2172-S Chr11 7337530 Chr5 14772939 0 Translocation 0 FN2172-S Chr11 7337530 Chr5 14772939 0 Translocation 0 LOC_Os05g25400 RNA binding protein, putative, expressed FN2172-S Chr12 11776427 G-A 0 0 Single Base Substitution 0 HET FN2172-S Chr12 14132386 A-G 0 0 Single Base Substitution 0 HET FN2172-S Chr12 16373487 C-A 0 0 Single Base Substitution 0 HET FN2172-S Chr12 17680346 Chr1 33032430 0 Translocation 0 FN2172-S Chr12 18610625 Chr7 4111343 0 Translocation 0 LOC_Os12g30980 expressed protein FN2172-S Chr12 25811358 A-T 0 0 Single Base Substitution 0 Homo FN2172-S Chr2 10241411 Chr1 37257793 0 Translocation 0 FN2172-S Chr2 12881435 C-T 0 0 Single Base Substitution 0 Homo FN2172-S Chr2 2071915 2071916 0 0 Insertion 1 HET FN2172-S Chr2 20891847 T-C 0 0 Single Base Substitution 0 HET FN2172-S Chr2 23813877 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g39470 cyclin, N-terminal domain containing protein, expressed FN2172-S Chr2 27465057 C-T 0 0 Single Base Substitution 0 HET FN2172-S Chr2 29309092 29309379 0 0 Inversion 0 FN2172-S Chr2 32258921 G-T 0 0 Single Base Substitution 0 HET FN2172-S Chr2 6825634 6825643 0 0 Deletion 9 HET FN2172-S Chr2 6828217 A-G 0 0 Single Base Substitution 0 Homo FN2172-S Chr2 8962221 A-G 0 0 Single Base Substitution 0 HET FN2172-S Chr3 15353738 15353739 0 0 Deletion 1 HET FN2172-S Chr3 19431146 A-T 0 0 Single Base Substitution 0 HET FN2172-S Chr3 2893819 G-A 0 0 Single Base Substitution 0 HET FN2172-S Chr3 28999730 T-A 0 0 Single Base Substitution 0 Homo FN2172-S Chr3 29617576 A-G 0 0 Single Base Substitution 0 Homo FN2172-S Chr4 11797752 C-T 0 0 Single Base Substitution 0 HET FN2172-S Chr4 26827558 G-T 0 0 Single Base Substitution 0 HET FN2172-S Chr4 5098088 5098089 0 0 Deletion 1 frameshift_variant HET LOC_Os04g09520 LTPL59 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN2172-S Chr4 7567402 7567403 0 0 Insertion 1 HET FN2172-S Chr5 11414416 G-A 0 0 Single Base Substitution 0 HET FN2172-S Chr5 14591026 G-A 0 0 Single Base Substitution 0 Homo FN2172-S Chr5 14591027 G-A 0 0 Single Base Substitution 0 Homo FN2172-S Chr5 24581954 24581957 0 0 Insertion 3 HET FN2172-S Chr5 3992940 T-A 0 0 Single Base Substitution 0 Homo FN2172-S Chr5 5367113 5367374 0 0 Inversion 0 FN2172-S Chr6 17570819 C-A 0 0 Single Base Substitution 0 HET FN2172-S Chr6 17775427 C-A 0 0 Single Base Substitution 0 HET FN2172-S Chr6 22502342 C-A 0 0 Single Base Substitution 0 HET FN2172-S Chr6 22668015 22668016 0 0 Insertion 1 HET FN2172-S Chr6 3490407 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g07280 tubulin beta-1 chain, putative, expressed FN2172-S Chr6 7566847 7567073 0 0 Inversion 0 LOC_Os06g13650 alpha-mannosidase 2, putative, expressed FN2172-S Chr7 10189593 10189598 0 0 Deletion 5 Homo FN2172-S Chr7 13484420 T-A 0 0 Single Base Substitution 0 Homo FN2172-S Chr7 1635438 Chr6 26814581 0 Translocation 0 FN2172-S Chr7 18879305 Chr6 10144180 0 Translocation 0 FN2172-S Chr7 21040730 Chr5 15752963 0 Translocation 0 FN2172-S Chr7 25979565 C-G 0 0 Single Base Substitution 0 HET FN2172-S Chr8 567782 T-G 0 0 Single Base Substitution 0 Homo FN2172-S Chr8 6761144 Chr5 8422520 0 Translocation 0 FN2172-S Chr9 11724773 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g19610 retrotransposon protein, putative, unclassified, expressed FN2172-S Chr9 13145534 G-A 0 0 Single Base Substitution 0 HET FN2172-S Chr9 4370061 A-G 0 0 Single Base Substitution 0 HET FN2172-S Chr9 9415222 Chr1 24727018 0 Translocation 0