FN2175-S Chr1 14684001 14712000 0 0 Deletion 27999 LOC_Os01g25890 retrotransposon protein, putative, unclassified, expressed FN2175-S Chr1 14684001 14712000 0 0 Deletion 27999 LOC_Os01g25900 retrotransposon protein, putative, unclassified, expressed FN2175-S Chr1 14684001 14712000 0 0 Deletion 27999 LOC_Os01g25910 retrotransposon protein, putative, unclassified, expressed FN2175-S Chr1 14684001 14712000 0 0 Deletion 27999 LOC_Os01g25920 expressed protein FN2175-S Chr1 14684001 14712000 0 0 Deletion 27999 LOC_Os01g25930 retrotransposon protein, putative, unclassified, expressed FN2175-S Chr1 18777520 C-A 0 0 Single Base Substitution 0 HET FN2175-S Chr1 36614284 36614288 0 0 Deletion 4 HET FN2175-S Chr1 7042525 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g12720 protein kinase domain containing protein, expressed FN2175-S Chr1 7505780 G-A 0 0 Single Base Substitution 0 HET FN2175-S Chr1 7835878 7835906 0 0 Deletion 28 HET FN2175-S Chr1 8484056 8484207 0 0 Inversion 0 FN2175-S Chr10 1050738 Chr2 34774040 0 Translocation 0 FN2175-S Chr10 1423778 A-T 0 0 Single Base Substitution 0 Homo FN2175-S Chr10 19421490 A-T 0 0 Single Base Substitution 0 HET FN2175-S Chr10 20051521 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g37468 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2175-S Chr10 5085749 5085750 0 0 Insertion 1 HET FN2175-S Chr10 8093846 8093893 0 0 Deletion 47 HET FN2175-S Chr11 10957001 10982000 0 0 Deletion 24999 LOC_Os11g19190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2175-S Chr11 10957001 10982000 0 0 Deletion 24999 LOC_Os11g19200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2175-S Chr11 10957001 10982000 0 0 Deletion 24999 LOC_Os11g19210 beta-D-xylosidase, putative, expressed FN2175-S Chr11 10957001 10982000 0 0 Deletion 24999 LOC_Os11g19220 mitosis protein dim1, putative, expressed FN2175-S Chr11 16720335 A-G 0 0 Single Base Substitution 0 HET FN2175-S Chr11 22117557 22117649 0 0 Deletion 92 HET FN2175-S Chr11 9094002 9094235 0 0 Inversion 0 LOC_Os11g16430 diphthamide biosynthesis protein, putative, expressed FN2175-S Chr11 9460763 C-T 0 0 Single Base Substitution 0 HET FN2175-S Chr11 9618851 9618852 0 0 Insertion 1 frameshift_variant HET LOC_Os11g17270 expressed protein FN2175-S Chr12 2073079 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2175-S Chr12 24228014 T-G 0 0 Single Base Substitution 0 HET FN2175-S Chr12 4228115 4228118 0 0 Insertion 3 HET FN2175-S Chr12 9434683 9434689 0 0 Deletion 6 Homo FN2175-S Chr12 9725448 Chr9 13612954 0 Translocation 0 FN2175-S Chr2 10892342 11125334 0 0 Inversion 0 FN2175-S Chr2 10892344 11125337 0 0 Inversion 0 FN2175-S Chr2 20537319 20537320 0 0 Deletion 1 Homo FN2175-S Chr2 20564666 C-T 0 0 Single Base Substitution 0 Homo FN2175-S Chr2 2262697 C-T 0 0 Single Base Substitution 0 HET FN2175-S Chr3 10045023 G-A 0 0 Single Base Substitution 0 HET FN2175-S Chr3 14942771 14942772 0 0 Deletion 1 Homo FN2175-S Chr3 2449640 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g05030 dirigent, putative, expressed FN2175-S Chr3 25386607 Chr1 15783894 0 Translocation 0 FN2175-S Chr3 25596905 T-C 0 0 Single Base Substitution 0 HET FN2175-S Chr3 27411296 A-G 0 0 Single Base Substitution 0 HET FN2175-S Chr3 32868261 32868437 0 0 Inversion 0 LOC_Os03g57670 DUF260 domain containing protein, putative, expressed FN2175-S Chr3 34955757 Chr1 14809236 0 Translocation 0 LOC_Os03g61670 calreticulin precursor, putative, expressed FN2175-S Chr4 19700274 19700283 0 0 Deletion 9 HET FN2175-S Chr4 2151997 A-G 0 0 Single Base Substitution 0 Homo FN2175-S Chr4 25640801 25641128 0 0 Inversion 0 LOC_Os04g43360 Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed FN2175-S Chr4 25940180 T-C 0 0 Single Base Substitution 0 Homo FN2175-S Chr4 3332188 3332189 0 0 Insertion 1 HET FN2175-S Chr4 4244006 4244007 0 0 Insertion 1 HET FN2175-S Chr4 6326020 6326208 0 0 Inversion 0 LOC_Os04g11550 retrotransposon protein, putative, unclassified, expressed FN2175-S Chr4 7296742 G-C 0 0 Single Base Substitution 0 Homo FN2175-S Chr5 29931151 29931152 0 0 Insertion 1 HET FN2175-S Chr5 6101006 T-C 0 0 Single Base Substitution 0 Homo FN2175-S Chr5 818597 A-T 0 0 Single Base Substitution 0 HET FN2175-S Chr5 9790463 G-A 0 0 Single Base Substitution 0 Homo FN2175-S Chr6 12524160 A-T 0 0 Single Base Substitution 0 HET FN2175-S Chr6 16373639 16373640 0 0 Deletion 1 frameshift_variant Homo LOC_Os06g28750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2175-S Chr6 23550549 Chr3 11224769 0 Translocation 0 LOC_Os03g19950 expressed protein FN2175-S Chr6 23550549 Chr3 11224769 0 Translocation 0 LOC_Os06g39660 FAD binding domain containing protein, expressed FN2175-S Chr6 737098 C-A 0 0 Single Base Substitution 0 HET FN2175-S Chr7 13883151 C-G 0 0 Single Base Substitution 0 HET FN2175-S Chr7 23596619 A-C 0 0 Single Base Substitution 0 HET FN2175-S Chr8 10870979 A-C 0 0 Single Base Substitution 0 Homo FN2175-S Chr8 1278639 A-C 0 0 Single Base Substitution 0 HET FN2175-S Chr8 14910857 G-A 0 0 Single Base Substitution 0 HET FN2175-S Chr8 19105391 19105396 0 0 Deletion 5 frameshift_variant Homo LOC_Os08g30940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2175-S Chr8 21317561 T-A 0 0 Single Base Substitution 0 Homo FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05100 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05110 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05130 retrotransposon protein, putative, Ty3-gypsy subclass FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05140 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05150 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05160 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05190 retrotransposon protein, putative, Ty3-gypsy subclass FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05210 retrotransposon protein, putative, Ty3-gypsy subclass FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05230 retrotransposon protein, putative, unclassified FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05240 retrotransposon protein, putative, unclassified, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05260 retrotransposon protein, putative, unclassified FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05270 retrotransposon protein, putative, unclassified, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05280 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05290 receptor-like protein kinase 5 precursor, putative, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05300 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05310 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05320 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05330 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05340 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05360 transposon protein, putative, unclassified, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05370 conserved hypothetical protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05380 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05410 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05440 NB-ARC domain containing protein, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05450 transposon protein, putative, unclassified, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05460 OsFBL40 - F-box domain and LRR containing protein, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05470 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05480 OsFBX261 - F-box domain containing protein, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05490 tRNA synthetase, putative, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05500 retrotransposon protein, putative, unclassified FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05510 MYB family transcription factor, putative, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05520 myb-like DNA-binding domain containing protein, putative, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05530 LSM domain containing protein, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05540 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05550 expressed protein FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05560 zinc finger, C3HC4 type domain containing protein, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05570 monodehydroascorbate reductase, putative, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05580 aquaporin protein, putative, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05590 aquaporin protein, putative, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05600 aquaporin protein, putative, expressed FN2175-S Chr8 2628001 3003000 0 0 Deletion 374999 LOC_Os08g05610 cytochrome P450, putative, expressed FN2175-S Chr8 26680580 26680581 0 0 Insertion 1 HET FN2175-S Chr8 26844431 C-T 0 0 Single Base Substitution 0 HET FN2175-S Chr8 5330419 C-A 0 0 Single Base Substitution 0 SPLICE_SITE_ACCEPTOR HET LOC_Os08g09200 aconitate hydratase protein, putative, expressed FN2175-S Chr9 10136507 10136508 0 0 Deletion 1 HET FN2175-S Chr9 13592202 Chr5 18557692 0 Translocation 0 FN2175-S Chr9 13690484 Chr5 18555112 0 Translocation 0 LOC_Os09g23140 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN2175-S Chr9 16905094 A-T 0 0 Single Base Substitution 0 Homo FN2175-S Chr9 21455976 C-T 0 0 Single Base Substitution 0 Homo FN2175-S Chr9 21456061 21456075 0 0 Deletion 14 Homo FN2175-S Chr9 21457313 C-A 0 0 Single Base Substitution 0 Homo FN2175-S Chr9 9104328 Chr4 17791425 0 Translocation 0 FN2175-S Chr9 9104328 Chr4 17791425 0 Translocation 0 LOC_Os04g29840 expressed protein