FN2196-S Chr1 16999239 16999243 0 0 Deletion 4 frameshift_variant Homo LOC_Os01g31090 expressed protein FN2196-S Chr1 25171583 G-A 0 0 Single Base Substitution 0 HET FN2196-S Chr1 29384079 29384085 0 0 Deletion 6 inframe_deletion Homo LOC_Os01g51140 helix-loop-helix DNA-binding domain containing protein, expressed FN2196-S Chr1 29587425 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g51480 expressed protein FN2196-S Chr1 29926067 29926074 0 0 Insertion 7 Homo FN2196-S Chr1 32221477 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g55940 OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed FN2196-S Chr1 32221478 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g55940 OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed FN2196-S Chr1 38613786 38613788 0 0 Deletion 2 HET FN2196-S Chr1 6364507 T-A 0 0 Single Base Substitution 0 Homo FN2196-S Chr10 10391657 T-A 0 0 Single Base Substitution 0 HET FN2196-S Chr10 11497556 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g22220 retrotransposon, putative, centromere-specific, expressed FN2196-S Chr10 16926941 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g32240 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 23040190 23040191 0 0 Deletion 1 HET FN2196-S Chr10 4079121 T-A 0 0 Single Base Substitution 0 Homo FN2196-S Chr10 4079122 G-A 0 0 Single Base Substitution 0 Homo FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01730 hypothetical protein FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01740 hypothetical protein FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01750 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01760 peroxidase precursor, putative, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01770 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01780 retrotransposon protein, putative, unclassified FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01790 transposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01800 transferase family protein, putative, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01810 hypothetical protein FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01820 expressed protein FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01830 expressed protein FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01840 hypothetical protein FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01844 expressed protein FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01850 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01860 retrotransposon protein, putative, LINE subclass, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01870 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01880 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01890 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01900 retrotransposon protein, putative, LINE subclass, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01910 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01920 transferase family protein, putative, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01930 transferase family protein, putative, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01970 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g01984 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g02000 transferase family protein, putative, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g02010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g02020 expressed protein FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g02030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g02040 peroxidase precursor, putative, expressed FN2196-S Chr10 475001 677000 0 0 Deletion 201999 LOC_Os10g02050 expressed protein FN2196-S Chr10 5978569 T-A 0 0 Single Base Substitution 0 HET FN2196-S Chr10 6486970 C-A 0 0 Single Base Substitution 0 HET FN2196-S Chr10 676044 Chr3 28445994 0 Translocation 0 FN2196-S Chr10 676729 Chr9 12133652 0 Translocation 0 FN2196-S Chr10 676729 Chr9 12133652 0 Translocation 0 LOC_Os09g20250 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2196-S Chr10 9238880 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g18190 retrotransposon protein, putative, Ty1-copia subclass FN2196-S Chr11 17748869 C-T 0 0 Single Base Substitution 0 HET FN2196-S Chr11 17790171 T-C 0 0 Single Base Substitution 0 HET FN2196-S Chr11 21620269 C-A 0 0 Single Base Substitution 0 HET FN2196-S Chr11 21620270 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g36640 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr12 7498166 Chr7 13571127 0 Translocation 0 LOC_Os12g13400 expressed protein FN2196-S Chr2 1187817 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g03020 EF hand family protein, putative, expressed FN2196-S Chr2 15208476 G-A 0 0 Single Base Substitution 0 HET FN2196-S Chr2 30027405 30027417 0 0 Deletion 12 Homo FN2196-S Chr2 35816681 T-A 0 0 Single Base Substitution 0 HET FN2196-S Chr2 5062641 A-T 0 0 Single Base Substitution 0 HET FN2196-S Chr2 8793772 C-T 0 0 Single Base Substitution 0 HET FN2196-S Chr3 14107086 14107088 0 0 Deletion 2 HET FN2196-S Chr3 14968565 14968579 0 0 Deletion 14 HET FN2196-S Chr3 17303087 A-T 0 0 Single Base Substitution 0 HET FN2196-S Chr3 21929921 A-C 0 0 Single Base Substitution 0 HET FN2196-S Chr3 22596283 22596284 0 0 Deletion 1 HET FN2196-S Chr3 28096542 A-T 0 0 Single Base Substitution 0 HET FN2196-S Chr3 30994779 C-T 0 0 Single Base Substitution 0 HET FN2196-S Chr3 3821817 3822077 0 0 Inversion 0 LOC_Os03g07510 expressed protein FN2196-S Chr3 4068329 G-A 0 0 Single Base Substitution 0 HET FN2196-S Chr3 741831 741838 0 0 Deletion 7 HET FN2196-S Chr4 18124292 G-C 0 0 Single Base Substitution 0 HET FN2196-S Chr4 25597439 25597447 0 0 Deletion 8 Homo FN2196-S Chr4 26669462 C-T 0 0 Single Base Substitution 0 Homo FN2196-S Chr4 27954050 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g47080 anthocyanin regulatory Lc protein, putative, expressed FN2196-S Chr4 27954051 C-T 0 0 Single Base Substitution 0 Homo FN2196-S Chr4 30452082 T-C 0 0 Single Base Substitution 0 HET FN2196-S Chr4 34189673 C-A 0 0 Single Base Substitution 0 Homo FN2196-S Chr4 3856703 C-T 0 0 Single Base Substitution 0 Homo FN2196-S Chr4 6286717 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g11500 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr4 7184908 C-T 0 0 Single Base Substitution 0 HET FN2196-S Chr5 17487775 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g30170 transposon protein, putative, unclassified, expressed FN2196-S Chr5 20601081 A-T 0 0 Single Base Substitution 0 HET FN2196-S Chr5 21185529 21229376 0 0 Inversion 0 LOC_Os05g35650 peptide transporter PTR2, putative, expressed FN2196-S Chr5 21185537 21229376 0 0 Inversion 0 LOC_Os05g35650 peptide transporter PTR2, putative, expressed FN2196-S Chr5 23858409 23858413 0 0 Insertion 4 HET FN2196-S Chr5 24339404 24411688 0 0 Inversion 0 LOC_Os05g41560 transposon protein, putative, unclassified, expressed FN2196-S Chr5 24339404 24411688 0 0 Inversion 0 LOC_Os05g41720 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr5 24339453 24411693 0 0 Inversion 0 LOC_Os05g41560 transposon protein, putative, unclassified, expressed FN2196-S Chr5 24339453 24411693 0 0 Inversion 0 LOC_Os05g41720 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr5 29302060 A-G 0 0 Single Base Substitution 0 Homo FN2196-S Chr5 6670092 6670096 0 0 Deletion 4 Homo FN2196-S Chr5 6988359 6988360 0 0 Deletion 1 Homo FN2196-S Chr5 8601605 8601606 0 0 Deletion 1 Homo FN2196-S Chr6 11649304 11649310 0 0 Deletion 6 HET FN2196-S Chr6 12235889 12235890 0 0 Deletion 1 frameshift_variant HET LOC_Os06g21170 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2196-S Chr6 13264184 13264188 0 0 Deletion 4 HET FN2196-S Chr6 14841610 15092414 0 0 Inversion 0 FN2196-S Chr6 14842896 15169399 0 0 Inversion 0 LOC_Os06g25340 hypothetical protein FN2196-S Chr6 15092001 15138000 0 0 Deletion 45999 LOC_Os06g25840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2196-S Chr6 15092001 15138000 0 0 Deletion 45999 LOC_Os06g25850 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr6 15092001 15138000 0 0 Deletion 45999 LOC_Os06g25860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2196-S Chr6 15092001 15138000 0 0 Deletion 45999 LOC_Os06g25870 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr6 15092001 15138000 0 0 Deletion 45999 LOC_Os06g25880 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr6 15142001 15166000 0 0 Deletion 23999 LOC_Os06g25890 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr6 15142001 15166000 0 0 Deletion 23999 LOC_Os06g25900 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr6 15142001 15166000 0 0 Deletion 23999 LOC_Os06g25910 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2196-S Chr6 25426205 25426207 0 0 Insertion 2 HET FN2196-S Chr6 27560137 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g45540 zinc-binding protein, putative, expressed FN2196-S Chr6 8423069 T-A 0 0 Single Base Substitution 0 Homo FN2196-S Chr6 8593654 G-A 0 0 Single Base Substitution 0 Homo FN2196-S Chr7 18411595 A-G 0 0 Single Base Substitution 0 Homo FN2196-S Chr7 19358211 19358213 0 0 Deletion 2 HET FN2196-S Chr7 23487335 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g39230 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr7 24956842 C-T 0 0 Single Base Substitution 0 HET FN2196-S Chr7 25931643 25931645 0 0 Insertion 2 HET FN2196-S Chr7 28978785 28978789 0 0 Deletion 4 HET FN2196-S Chr7 9766931 C-T 0 0 Single Base Substitution 0 Homo FN2196-S Chr8 15383527 Chr4 7447945 0 Translocation 0 LOC_Os08g25300 expressed protein FN2196-S Chr8 8402517 G-A 0 0 Single Base Substitution 0 HET FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19670 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19690 expressed protein FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19700 protein kinase domain containing protein, expressed FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19710 hypersensitive-induced response protein, putative, expressed FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19720 expressed protein FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19734 isochorismate synthase 1, chloroplast precursor, putative, expressed FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19750 expressed protein FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19760 hypothetical protein FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19780 expressed protein FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19790 puromycin-sensitive aminopeptidase, putative, expressed FN2196-S Chr9 11757001 11857000 0 0 Deletion 99999 LOC_Os09g19800 aminopeptidase, putative, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19820 aminopeptidase, putative, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19830 histone-lysine N-methyltransferase, putative, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19840 expressed protein FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19850 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19860 transposon protein, putative, unclassified, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19870 transposon protein, putative, unclassified, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19880 expressed protein FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19890 expressed protein FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19900 WD domain, G-beta repeat domain containing protein, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19910 expressed protein FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19920 metallo-beta-lactamase family protein, putative, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19930 HOTHEAD precursor, putative, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19940 cwfJ-like family protein, putative, expressed FN2196-S Chr9 11862001 11946000 0 0 Deletion 83999 LOC_Os09g19950 DUF260 domain containing protein, putative, expressed FN2196-S Chr9 11951001 11967000 0 0 Deletion 15999 LOC_Os09g19954 ribosomal protein, putative, expressed FN2196-S Chr9 11951001 11967000 0 0 Deletion 15999 LOC_Os09g19960 expressed protein FN2196-S Chr9 11951001 11967000 0 0 Deletion 15999 LOC_Os09g19970 expressed protein FN2196-S Chr9 11951001 11967000 0 0 Deletion 15999 LOC_Os09g19980 GTP binding protein, putative, expressed FN2196-S Chr9 11951001 11967000 0 0 Deletion 15999 LOC_Os09g19990 retrotransposon protein, putative, unclassified FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20000 heavy metal-associated domain containing protein, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20010 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20020 NBS-LRR resistance-like protein B8, putative, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20024 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20030 disease resistance RPP13-like protein 1, putative, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20040 resistance-like protein I2GA-SH194-2, putative, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20050 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20060 hypothetical protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20070 transposon protein, putative, CACTA, En/Spm sub-class FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20090 L-ascorbate oxidase precursor, putative, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20100 hypothetical protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20110 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20140 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20150 C1-like domain containing protein, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20170 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20180 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20190 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20200 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20210 hypothetical protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20220 glutathione S-transferase, putative, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20230 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20240 DUF581 domain containing protein, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20250 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20260 polyamine oxidase precursor, putative, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20270 expressed protein FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20284 amine oxidase, flavin-containing, domain containing protein, expressed FN2196-S Chr9 11974001 12183000 0 0 Deletion 208999 LOC_Os09g20300 retrotransposon protein, putative, unclassified, expressed FN2196-S Chr9 12132382 Chr4 33608212 0 Translocation 0 FN2196-S Chr9 12133648 Chr4 33607599 0 Translocation 0 LOC_Os09g20250 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2196-S Chr9 12134682 Chr3 28086646 0 Translocation 0 LOC_Os03g49340 transposon protein, putative, Mariner sub-class, expressed FN2196-S Chr9 12134682 Chr3 28086646 0 Translocation 0 LOC_Os09g20250 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2196-S Chr9 12548925 12548929 0 0 Deletion 4 HET FN2196-S Chr9 19088260 T-A 0 0 Single Base Substitution 0 HET